View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10632_1 (Length: 639)
Name: NF10632_1
Description: NF10632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10632_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 136 - 632
Target Start/End: Complemental strand, 40796154 - 40795658
Alignment:
| Q |
136 |
aaaatattgcaaggtgtttagggcaaaataaaatttcattatagagttgattctctgtgacatcaaaacgagtgggttccctaaattatattaattggag |
235 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40796154 |
aaaatattgcaaggtgtttagagcaaaataaaatttcattatagagttgattctatgtgacatcaaaacgattgggttccctaaattatattaattggag |
40796055 |
T |
|
| Q |
236 |
aaatgtataaattcaagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagca |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40796054 |
aaatgtataaattcaagagcttgtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagca |
40795955 |
T |
|
| Q |
336 |
gtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgt |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40795954 |
gtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgt |
40795855 |
T |
|
| Q |
436 |
tcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtt |
535 |
Q |
| |
|
||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40795854 |
tcatgatccccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtt |
40795755 |
T |
|
| Q |
536 |
tctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcatctca |
632 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40795754 |
tctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttctgctggcttcttctca |
40795658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 219 - 631
Target Start/End: Complemental strand, 41670703 - 41670290
Alignment:
| Q |
219 |
aattatattaattggagaaatgtata-aattcaagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccagga |
317 |
Q |
| |
|
|||||||| || | ||||||||||| |||||||||||| || |||||||| || || ||||||||||| |||||||| ||||| |||||||| || || |
|
|
| T |
41670703 |
aattatataaactagagaaatgtatcgaattcaagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccgggg |
41670604 |
T |
|
| Q |
318 |
agaacgagacgaacagcagtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaa |
417 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| | || |||||||| ||||||||||||||||||||||| | |
|
|
| T |
41670603 |
agaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttcttgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaaga |
41670504 |
T |
|
| Q |
418 |
tgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggt |
517 |
Q |
| |
|
| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41670503 |
tatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggt |
41670404 |
T |
|
| Q |
518 |
ttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttctccgctttggttttctctgcgggagctttttct |
617 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||| || || || ||| |
|
|
| T |
41670403 |
ttcaacgctcttcttgtttctcttcttcttcttgtcggtggaggatgcttcctttgggatcttcttttcggctttggttttctctgctggcgccttctct |
41670304 |
T |
|
| Q |
618 |
gctggcttcatctc |
631 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
41670303 |
gctggcttcttctc |
41670290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 40796293 - 40796186
Alignment:
| Q |
23 |
taagcatacataaactagcatcttaatttgtcgagaaactcaaaatattcagaatcaaatgttgaagcagttctgagttgtcggtaacagtttgaatcaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40796293 |
taagcatacataaactagcatcttaatttgtcgagaaactcaaaatattcagaatcaaatgttgaagcagttctgagttgtcggtaacagtttgaatcaa |
40796194 |
T |
|
| Q |
123 |
ttgaaatt |
130 |
Q |
| |
|
|||||||| |
|
|
| T |
40796193 |
ttgaaatt |
40796186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 245 - 532
Target Start/End: Complemental strand, 29391742 - 29391455
Alignment:
| Q |
245 |
aattcaagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatc |
344 |
Q |
| |
|
||||||||| || ||||||||||| || || |||||||| ||||| ||||| || || || | ||| || |||||||| | ||| ||||| || |||||| |
|
|
| T |
29391742 |
aattcaagaactcgtaaatttggtaacagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatc |
29391643 |
T |
|
| Q |
345 |
tcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattc |
444 |
Q |
| |
|
|| | || || || || |||||||||||||| ||||| | ||| || | |||||||||||| |||||||| || |||||||||||||||||||| || | |
|
|
| T |
29391642 |
tccctcgacgtaatcgtcggtttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatcc |
29391543 |
T |
|
| Q |
445 |
ccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttctt |
532 |
Q |
| |
|
||||||| ||| || ||||| || |||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
29391542 |
ccatagctttggaagaaatacctatatcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttcaacgctcttctt |
29391455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 258 - 553
Target Start/End: Complemental strand, 23402337 - 23402042
Alignment:
| Q |
258 |
gtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtga |
357 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||||| |||||||| | ||| ||||||||||| || | || ||||||||||| || | || |||| |
|
|
| T |
23402337 |
gtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtga |
23402238 |
T |
|
| Q |
358 |
tggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgct |
457 |
Q |
| |
|
| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
23402237 |
ttgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgct |
23402138 |
T |
|
| Q |
458 |
tgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc |
553 |
Q |
| |
|
||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
23402137 |
tgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttcttcttcttgtc |
23402042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 258 - 550
Target Start/End: Complemental strand, 23886090 - 23885798
Alignment:
| Q |
258 |
gtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtga |
357 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||||| |||||||| | ||| ||||||||||| || | || ||||||||||| || | || |||| |
|
|
| T |
23886090 |
gtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtga |
23885991 |
T |
|
| Q |
358 |
tggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgct |
457 |
Q |
| |
|
| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
23885990 |
ttgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgct |
23885891 |
T |
|
| Q |
458 |
tgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
550 |
Q |
| |
|
||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| || |||||||| ||||||| |||||||| |
|
|
| T |
23885890 |
tgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttcttctt |
23885798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 250 - 550
Target Start/End: Original strand, 34662048 - 34662348
Alignment:
| Q |
250 |
aagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacg |
349 |
Q |
| |
|
|||| |||||||| || || || |||||||| ||||| || ||||| ||||| || | ||| ||||||||||| || | ||||||||||||||| || | |
|
|
| T |
34662048 |
aagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccct |
34662147 |
T |
|
| Q |
350 |
agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccata |
449 |
Q |
| |
|
|| || || || || |||||||| || | || |||||||| ||||| |||||||||||||| || || |||||||||||||||||||| || ||||| |
|
|
| T |
34662148 |
cgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatg |
34662247 |
T |
|
| Q |
450 |
gccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttct |
549 |
Q |
| |
|
|| |||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
34662248 |
gctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttcttcttct |
34662347 |
T |
|
| Q |
550 |
t |
550 |
Q |
| |
|
| |
|
|
| T |
34662348 |
t |
34662348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 250 - 547
Target Start/End: Original strand, 23415716 - 23416013
Alignment:
| Q |
250 |
aagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacg |
349 |
Q |
| |
|
||||||| ||||| || || || || ||||| ||||| || ||||| |||||||| | ||| ||||||||||| || | || ||||||||||| || | |
|
|
| T |
23415716 |
aagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct |
23415815 |
T |
|
| Q |
350 |
agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccata |
449 |
Q |
| |
|
|| ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
23415816 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatg |
23415915 |
T |
|
| Q |
450 |
gccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttctt |
547 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||| ||||| || |||||||| ||||||| ||||| |
|
|
| T |
23415916 |
gccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttctt |
23416013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 258 - 550
Target Start/End: Original strand, 23453387 - 23453679
Alignment:
| Q |
258 |
gtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtga |
357 |
Q |
| |
|
||||| ||||| || || ||||| || || || ||||| |||||||| | ||| ||||||||||| |||| || ||||||||||| || | || |||| |
|
|
| T |
23453387 |
gtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttcccttgaagtga |
23453486 |
T |
|
| Q |
358 |
tggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgct |
457 |
Q |
| |
|
| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
23453487 |
ttgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgct |
23453586 |
T |
|
| Q |
458 |
tgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
550 |
Q |
| |
|
||||||||| ||||| || ||||| || || ||||| |||||||||||||||||||| |||||||| |||||||| ||||||| |||||||| |
|
|
| T |
23453587 |
tgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctacattcttcttgcttctcttcttcttctt |
23453679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 273 - 553
Target Start/End: Complemental strand, 23868980 - 23868700
Alignment:
| Q |
273 |
gctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtaggtttcttgt |
372 |
Q |
| |
|
||||| ||||| || || ||||| || ||||| | ||| ||||||||||| || | |||||||||||||| || | || ||||| || || ||||||| |
|
|
| T |
23868980 |
gcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggcttcttgt |
23868881 |
T |
|
| Q |
373 |
tgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtc |
472 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||| |||||||| || |||||||||||||| ||||| |
|
|
| T |
23868880 |
tgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtc |
23868781 |
T |
|
| Q |
473 |
aggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc |
553 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||||||||||||| ||||| || |||||||| ||||||| ||||||||||| |
|
|
| T |
23868780 |
tgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttcttcttgtc |
23868700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 366 - 550
Target Start/End: Complemental strand, 26434179 - 26433995
Alignment:
| Q |
366 |
ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac |
465 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
26434179 |
ttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagatac |
26434080 |
T |
|
| Q |
466 |
cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
550 |
Q |
| |
|
| ||||| |||||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
26434079 |
caatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt |
26433995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 264 - 550
Target Start/End: Complemental strand, 24307480 - 24307194
Alignment:
| Q |
264 |
ttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacgagaggtgatggtag |
363 |
Q |
| |
|
||||| || |||||||| ||||| || ||||| |||||||| | ||| ||||||||||| || | |||||||||||||| || | || ||||| || | |
|
|
| T |
24307480 |
ttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttg |
24307381 |
T |
|
| Q |
364 |
gtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagat |
463 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
24307380 |
gcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagat |
24307281 |
T |
|
| Q |
464 |
accgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
550 |
Q |
| |
|
||| ||||| || ||||| || || |||||||||||||| ||||||||||| ||||| || |||||||| ||||||| |||||||| |
|
|
| T |
24307280 |
accaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttcaacattcttcttgcttctcttcttcttctt |
24307194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 366 - 550
Target Start/End: Complemental strand, 26832890 - 26832706
Alignment:
| Q |
366 |
ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac |
465 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
26832890 |
ttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagatac |
26832791 |
T |
|
| Q |
466 |
cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
550 |
Q |
| |
|
| ||||| || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
26832790 |
caatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt |
26832706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 250 - 553
Target Start/End: Original strand, 23408547 - 23408850
Alignment:
| Q |
250 |
aagagcttgtaaatttggtgactgctttggttccctcggagacagcgtgcttggcaagttcgccaggaagaacgagacgaacagcagtctgaatctcacg |
349 |
Q |
| |
|
||||||| ||||| || || || || ||||| || || || ||||| |||||||| | ||| ||||||||||| || | || || |||||||| || | |
|
|
| T |
23408547 |
aagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttccct |
23408646 |
T |
|
| Q |
350 |
agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccata |
449 |
Q |
| |
|
|| ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
23408647 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatc |
23408746 |
T |
|
| Q |
450 |
gccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttct |
549 |
Q |
| |
|
|| |||||||||||||| ||||| || ||||| || || ||||| |||||||||||||||||||| |||||||| ||||||| ||||||| ||||||| |
|
|
| T |
23408747 |
gctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttcttcttct |
23408846 |
T |
|
| Q |
550 |
tgtc |
553 |
Q |
| |
|
|||| |
|
|
| T |
23408847 |
tgtc |
23408850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 366 - 550
Target Start/End: Complemental strand, 26435959 - 26435775
Alignment:
| Q |
366 |
ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagatac |
465 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| |||| ||| ||||| || || ||||||||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
26435959 |
ttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagatac |
26435860 |
T |
|
| Q |
466 |
cgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt |
550 |
Q |
| |
|
| ||||| || ||||| || || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||||| |
|
|
| T |
26435859 |
caatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt |
26435775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 431
Target Start/End: Original strand, 23451855 - 23451920
Alignment:
| Q |
366 |
ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaa |
431 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||||||||||||||| || || ||||||||| |
|
|
| T |
23451855 |
ttcttgttgtagcgagcaagtctggagtattcttgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 393 - 554
Target Start/End: Original strand, 40180420 - 40180581
Alignment:
| Q |
393 |
gattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaa |
492 |
Q |
| |
|
|||||||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| || |||| |
|
|
| T |
40180420 |
gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa |
40180519 |
T |
|
| Q |
493 |
ccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcg |
554 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||| ||||||| |||||||||||| |
|
|
| T |
40180520 |
ccttgaagatgtatatcttgtaggtttcaacgcttttcttcgttctcttcttcttcttgtcg |
40180581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 545
Target Start/End: Complemental strand, 29684822 - 29684676
Alignment:
| Q |
399 |
tgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttga |
498 |
Q |
| |
|
|||||||| |||| ||| || || || | ||||||||| || | ||||||||| || ||||| | ||| ||| |||||||||| || ||||||||||||| |
|
|
| T |
29684822 |
tgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaaccttga |
29684723 |
T |
|
| Q |
499 |
agatgtagatcttgtaggtttctacgctcttcttgtttctctttttc |
545 |
Q |
| |
|
| || || |||||||||||||| | ||| ||||| |||||||||| |
|
|
| T |
29684722 |
atatatatatcttgtaggtttcaatgcttttctttgatctctttttc |
29684676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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