View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10632_2 (Length: 611)
Name: NF10632_2
Description: NF10632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10632_2 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 2 - 598
Target Start/End: Original strand, 38215333 - 38215913
Alignment:
| Q |
2 |
gatctgtgacaaaaatgtttattagtatttcataaaattgaatgacttgtgaaccaagtgattgactgagcgacacattatatttttgccagacatgact |
101 |
Q |
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| T |
38215333 |
gatctgtgacaaaaatgtttattagtatttcataaaattgaatgacttgtgaaccaagtgattgactgagtgacacattatttttttaacagacatgact |
38215432 |
T |
|
| Q |
102 |
taccttccggattacaaaggcctctaccctagaaaccggagggttaacacgaaaattattttattttactaactagataatagtagtaatacagaataaa |
201 |
Q |
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| T |
38215433 |
taccttctggattacaaaggcctctaccctagaaaccggagggttaacacgaaaattattttattttactaactagataatagtagtaatacagaataaa |
38215532 |
T |
|
| Q |
202 |
agagtaattttgaagaacatnnnnnnncaacaggattgcgtacctgaaaagagagaggctggaatgacgagaaatttagagagtatcgttatgatatggt |
301 |
Q |
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| T |
38215533 |
agagtaattttgaagaacataaaaaaacaacaggattgcgtacctgaaaagagagaggctggaatgacgagaaatttagagagtatcgttatgatatgta |
38215632 |
T |
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| Q |
302 |
tggtatagatgaatgaatgaatgtgtagagaggcagccaccgtcctcacatgagaacgtttttcacatcctttcatttttctttattattatgtaaacaa |
401 |
Q |
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| T |
38215633 |
tg----------------gaatgtgtagagaggcagccaccgtcctcacatgagaacgtttttcacatcctttcatttttctttattattatgtaaacaa |
38215716 |
T |
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| Q |
402 |
aagggaaagtaaagtccgaattagctactctcgtttattttgttcttcattgaattcgatgcattcacatttgggacaccgcgtggcttcaactcaaatt |
501 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38215717 |
aagggaaagtaaagtcctaattagctactctcgttttttttgttctttattgaattcgatgcattcacatttgggacaccgcgtggcttcaactcaaatt |
38215816 |
T |
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| Q |
502 |
tatttatataatgatcaaacataaattaatttttaacacaaaattcaaaaatttgaagtctgctgcaactgcatttttcgatgctgaataacacaca |
598 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38215817 |
tattaatataatgatgaaacataaattaatttttaacacaaaattcaaaattttgaagtctgctgcaactgcatttttcgatgctgaataacacaca |
38215913 |
T |
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