View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10632_4 (Length: 430)
Name: NF10632_4
Description: NF10632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10632_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 34 - 377
Target Start/End: Original strand, 26080149 - 26080491
Alignment:
| Q |
34 |
cctatccaaaattctgagagctcaacgattgtatgcaactgacgcatgagaactgttattcttatagggttgtggttgggcctcattatgctaaagttgc |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26080149 |
cctatccaaaattctgagagctcaacgattgtatgcaactgacacatgagaactgttattcttatagggttgtggttgggcctcattatgctaaagttgc |
26080248 |
T |
|
| Q |
134 |
atgaatattcagtttgaactatgacagaatcgcatggtgaatatgctaaacataatttagagtaatagaatgttttttaggccacatttaaggcatacct |
233 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26080249 |
atgaatattcagtatgaactgtgacagaatcgcatggtgaacatgctaaacataatttagagtaatagaatgttttttaggccacatttaaggcatacct |
26080348 |
T |
|
| Q |
234 |
atgtaaaagggtgtaccggtcctccatcacttatttaccattagatttaatttgtttaactgatgagtcagatttaaaagggtatatttggtaacatttc |
333 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26080349 |
atgtaaaagggtgtaccgat-ctccatcacttatttaccattagatttaatttgtttaactgatgagtcagatttaaaagggtatatttggtaacatttc |
26080447 |
T |
|
| Q |
334 |
ttgtcccttcccctctggtaagctgcattgaaatttgtgacgat |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26080448 |
ttgtcccttcccctctggtaagctgcattgaaatttgtgacgat |
26080491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University