View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10632_8 (Length: 314)
Name: NF10632_8
Description: NF10632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10632_8 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 74 - 314
Target Start/End: Original strand, 6969097 - 6969337
Alignment:
| Q |
74 |
gttcatcagagaaggaggcagaagatgcagaaggctgaaaattcctaggcaatattgctagttattttatattagagtcttattaaaacattactatgaa |
173 |
Q |
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| T |
6969097 |
gttcatcagagaaggaggcagaagatgcagaaggctgaaaattcctaggcaatattgctagttattttatattagagtcttattaaaacattagtatgaa |
6969196 |
T |
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| Q |
174 |
tctctatttctatgcttacattagagtcttaatttactttattataagttagattaatatgctaaggttgaaacattgttggtgattatgctgaattaca |
273 |
Q |
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| T |
6969197 |
tctctatttctatgcttacattcgagtcttaatttactttattataagttagattaatatgctaaggttgaaacattgttggtgattatgctgaattaca |
6969296 |
T |
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| Q |
274 |
aactaaacaatgtacttcaggccttataacaaagtaggttg |
314 |
Q |
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| T |
6969297 |
aactaaacaatgtacttcaggccttataacaaagtaggttg |
6969337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 1000088 - 999959
Alignment:
| Q |
116 |
tcctaggcaatattgctagttattttatatt--agagtcttattaaaa------cattactatgaatctctatttctatgcttacattagagtcttaatt |
207 |
Q |
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| T |
1000088 |
tcctaggcaatattgctggttattttatattttagggtcttattaaaattaaaacattagtat-agtatctatttctatgcttacattagtgtcttgatt |
999990 |
T |
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| Q |
208 |
tactttattataagttagattaatatgctaa |
238 |
Q |
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| T |
999989 |
tacattaatataagttagattaatgtgctaa |
999959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 2178425 - 2178513
Alignment:
| Q |
144 |
attagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttactttattataagttagattaatat |
233 |
Q |
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| T |
2178425 |
attagagtcgtattaaaacattagtatgaatatctatttccatgcttacattacattcttattttagattattat-agttagattaatat |
2178513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 51315915 - 51315840
Alignment:
| Q |
135 |
ttattttatattagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttac |
210 |
Q |
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| T |
51315915 |
ttattttgcattagagtcttatgaaaacgttaatatgaatatctatttccatgtttacaatagagtcttattttac |
51315840 |
T |
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