View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10632_9 (Length: 301)
Name: NF10632_9
Description: NF10632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10632_9 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 31160260 - 31160560
Alignment:
| Q |
1 |
aaaagaacagataacaaactatacctgcttctttggcagctgaaaagctggcatgcacattgtaaattcaaagccaa-------aaccacaagcaaactg |
93 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31160260 |
aaaagaacagataacaaactatacctgcttctttggcagctgaaaagctggcatgcacattgtaaattcaaagccaaaacccaaaaccacaagcaaactg |
31160359 |
T |
|
| Q |
94 |
aacagaaggtgagaaaataattgttgcggtgttataagcaaatttagtaaaaacaagttcataagttaaggagaatgctaaatagtgacttctagaagca |
193 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |
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| T |
31160360 |
aacagaaggtgagaaaataattgttgcggtgttataagcaaatttagtaaaaacaagttcataagttaaggaaaatgctaaatagtaacttttagaagcc |
31160459 |
T |
|
| Q |
194 |
tctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatcacccttcttctc |
293 |
Q |
| |
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||||||| | |||||||||||||||| ||||||||||| |||||||||||| || |||||||| || |||||||||||||||||||||||||||||||| |
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| T |
31160460 |
tctagagcttgaaagaaagactttaaataccctcattatttgaggcttaaggcacgacaaatcaagctcatagagggctataaatatcacccttcttctc |
31160559 |
T |
|
| Q |
294 |
a |
294 |
Q |
| |
|
| |
|
|
| T |
31160560 |
a |
31160560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 24909258 - 24909153
Alignment:
| Q |
181 |
acttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatat |
280 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||| || |||||||||||||||| |||||||||| | ||| ||||| || | ||||||||||||| |
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| T |
24909258 |
acttctagaagcctctagagctcggcagaaagactt-aagtaccctcattacttgaagcttaagtcacgataaaacaggcccacaaagggctataaatac |
24909160 |
T |
|
| Q |
281 |
caccctt |
287 |
Q |
| |
|
||||||| |
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|
| T |
24909159 |
caccctt |
24909153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 24911479 - 24911374
Alignment:
| Q |
181 |
acttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatat |
280 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||| || |||||||||||||||| |||||||||| | ||| ||||| || | ||||||||||||| |
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| T |
24911479 |
acttctagaagcctctagagctcggcagaaagactt-aagtaccctcattacttgaagcttaagtcacgataaaacaggcccacaaagggctataaatac |
24911381 |
T |
|
| Q |
281 |
caccctt |
287 |
Q |
| |
|
||||||| |
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|
| T |
24911380 |
caccctt |
24911374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 14082890 - 14082787
Alignment:
| Q |
182 |
cttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatc |
281 |
Q |
| |
|
||||||||||| ||||||| | | ||||| |||| || ||||||||||||||| ||||||||||| ||| ||||| || ||| ||||||||||||||| |
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| T |
14082890 |
cttctagaagcctctagagcttggcagaaaaactt-aagtaccctcattacttg-ggcttaagtcacgacagatcagacatataaagggctataaatatc |
14082793 |
T |
|
| Q |
282 |
accctt |
287 |
Q |
| |
|
|||||| |
|
|
| T |
14082792 |
accctt |
14082787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 14654359 - 14654302
Alignment:
| Q |
189 |
aagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtca |
247 |
Q |
| |
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|||| ||||||| ||| |||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
14654359 |
aagcctctagagctcggcagaaagactt-aagtaccctcattacttgaggcttaagtca |
14654302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 12697365 - 12697261
Alignment:
| Q |
182 |
cttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatc |
281 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||| ||||| | ||||||||||||| ||||||||||| |||||| || |||||||||||||||||| | |
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|
| T |
12697365 |
cttctagaagcctctagagctcggcagaaaga-tttaaatgccctcattacttggggcttaagtcacaggaaatcaagcccatagagggctataaatacc |
12697267 |
T |
|
| Q |
282 |
accctt |
287 |
Q |
| |
|
|||||| |
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|
| T |
12697266 |
accctt |
12697261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 9375670 - 9375568
Alignment:
| Q |
184 |
tctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatcac |
283 |
Q |
| |
|
||||||||| ||||||||| || |||||||||| ||| ||||||||||||| ||||||||||| | | ||||| |||||||||||||||||| ||| |
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| T |
9375670 |
tctagaagcctctagagttggatagaaagacttaaatg-ccctcattacttggggcttaagtcacgagagttcaggtccatagagggctataaataccac |
9375572 |
T |
|
| Q |
284 |
cctt |
287 |
Q |
| |
|
|||| |
|
|
| T |
9375571 |
cctt |
9375568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 9161087 - 9161183
Alignment:
| Q |
182 |
cttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaata |
279 |
Q |
| |
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||||||||||| ||||||| ||| | |||||||| || ||||||| |||||||||||||| |||| ||| ||||||| | |||||||||||||||| |
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| T |
9161087 |
cttctagaagcgtctagagctcggcataaagactt-aagtaccctcgttacttgaggcttatgtcacgacagatcaggcccctagagggctataaata |
9161183 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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