View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10632_low_1 (Length: 442)
Name: NF10632_low_1
Description: NF10632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10632_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 8132165 - 8131741
Alignment:
| Q |
1 |
caagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattggactaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8132165 |
caagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattggactaa |
8132066 |
T |
|
| Q |
101 |
aggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaataaaagaagaagaggaaattcagtatcaaaatcacctctaaaacctaat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8132065 |
aggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaataaaagaagaaaaggaaattcagtatcaaaatcacctctaaaacctaat |
8131966 |
T |
|
| Q |
201 |
cataatgatcatctccagatcggtaccggtgctgctgctggtggttctagctcagcaagtgcaaattcttcttctaataatggttgcactaattctaatc |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8131965 |
cataatgatcatctccagatcggtaccggtgctgctgctggtggttctagctcagcaagtgcaaattcttcttctaataatggttgcactaattctaatg |
8131866 |
T |
|
| Q |
301 |
tgaatattggaatgcctaattttccaacacaatttccattcgtaacctctttacatcgtcataacgacaatagttatgcttctgagggcattggttcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8131865 |
tgaatattggaatgcctaattttccaacacaatttccattcgtaacctctttacatcgtcataacgacaatagttacgcttctgagggcattggttcttt |
8131766 |
T |
|
| Q |
401 |
gttggccaaaaatatgagcaatagt |
425 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
8131765 |
gttggccaaaaatatgagcaatagt |
8131741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 5211308 - 5211236
Alignment:
| Q |
6 |
tgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaa |
78 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5211308 |
tgtgaatcaaacaacacaaaattctgctactacaacaactacaatctctcacaaccacgccatttttgcaaaa |
5211236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 33823816 - 33823951
Alignment:
| Q |
1 |
caagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattggactaa |
100 |
Q |
| |
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||||||| || ||| |||||||||| || || |||||||||||||| || || | || || |||||||| ||||| || || |||||||||||||| || |
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| T |
33823816 |
caagatgcgactcatcaaacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaa |
33823915 |
T |
|
| Q |
101 |
aggtggtgcacttcgaaacgttcctgttggaggtgg |
136 |
Q |
| |
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||| ||||| | |||||||||| |||||||||| |
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| T |
33823916 |
aggaggtgctttaagaaacgttccaattggaggtgg |
33823951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 28437314 - 28437392
Alignment:
| Q |
1 |
caagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaac |
79 |
Q |
| |
|
|||||||||| || |||||||||| ||||| |||||||||||||||| ||| | |||||| | ||||| |||||||| |
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| T |
28437314 |
caagatgtgattctccaaacacaaaattctgttactacaacaactacagtctcactcaaccaagacatttctgcaaaac |
28437392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 3945995 - 3945850
Alignment:
| Q |
6 |
tgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattggactaaaggtg |
105 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||||||||| | | ||||||||| | ||||| || ||| |||| ||||||||||| | ||||| |
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| T |
3945995 |
tgtgactcatcaaacacaaagttttgttactacaacaactacagtttgtcacaaccaagacatttctgtaaagcttgcaaacgttattggacaagaggtg |
3945896 |
T |
|
| Q |
106 |
gtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaa |
151 |
Q |
| |
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|| | ||| |||| ||||||||||| ||||||| ||||| ||||| |
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|
| T |
3945895 |
gtactcttagaaatgttcctgttggtggtggttacagaagaaacaa |
3945850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 22483535 - 22483385
Alignment:
| Q |
1 |
caagatgtgaatcaacaaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattggactaa |
100 |
Q |
| |
|
|||||||||| |||| ||||| || || || ||||||||||| |||| ||||||||||||| | |||| ||||| ||||| | | ||||||||||| |
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| T |
22483535 |
caagatgtgactcaaacaacaccaaattttgttactacaacaattacagtctttcacaaccaagatatttctgcaagtcttgtaggagatattggactaa |
22483436 |
T |
|
| Q |
101 |
aggtggtgcacttcgaaacgttcctgttggaggtggttgtagaaggaacaa |
151 |
Q |
| |
|
||||||| |||| | || ||||||||||| || || ||| ||| |||||| |
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|
| T |
22483435 |
aggtggtacactaaggaatgttcctgttggtggggggtgtcgaaagaacaa |
22483385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35721709 - 35721757
Alignment:
| Q |
1 |
caagatgtgaatcaacaaacacaaagttctgctactacaacaactacaa |
49 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||||||||| ||||| |
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|
| T |
35721709 |
caagatgtgattcaacaaacacaaagttttgttactacaacaattacaa |
35721757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13481020 - 13481065
Alignment:
| Q |
1 |
caagatgtgaatcaacaaacacaaagttctgctactacaacaacta |
46 |
Q |
| |
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|||||||||| ||| | |||||||| |||||||||||||||||||| |
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| T |
13481020 |
caagatgtgactcacccaacacaaaattctgctactacaacaacta |
13481065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 41086276 - 41086156
Alignment:
| Q |
16 |
caaacacaaagttctgctactacaacaactacaatctttcacaaccacgccatttttgcaaaacttgtcgtcgttattggactaaaggtggtgcacttcg |
115 |
Q |
| |
|
||||||| || ||||| ||||||||||| |||| | || || ||||| ||||||||||| |||| | ||||||||||| |||||||| | ||||| |
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|
| T |
41086276 |
caaacaccaaattctgttactacaacaattacagcttgtcccagccacggtatttttgcaaaggttgtagacgttattggaccaaaggtggctctcttcg |
41086177 |
T |
|
| Q |
116 |
aaacgttcctgttggaggtgg |
136 |
Q |
| |
|
|| ||||||||||| ||||| |
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|
| T |
41086176 |
gaatgttcctgttggtggtgg |
41086156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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