View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10633_high_2 (Length: 445)
Name: NF10633_high_2
Description: NF10633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10633_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 29078040 - 29078428
Alignment:
| Q |
1 |
gacagtccataagcacaacaatacaacaattacacgtgccacctatcccttatatggacannnnnnnggtcacatattttgattttaatttaagcccatt |
100 |
Q |
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| T |
29078040 |
gacagtccataagcacaaccatacaacaattacacgtgccacctatcccttatatggacatttttttggtcacatattttgattttaatttaagcccatt |
29078139 |
T |
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| Q |
101 |
tcatgatattcccctactagacagaacgacccatattgtttctttcattaaatagtttgagatagctccaatatttatactgtagctgcataaattgaaa |
200 |
Q |
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| T |
29078140 |
tcatgatattcccctactagacagaacgacccatattgtttctttcattaaatagtttgagatagctccaatatttatactgtagctgcataaattgaaa |
29078239 |
T |
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| Q |
201 |
ttggatctacttgcactatctaattataattgtgaaattatttttagaaatggtcccttatcgtggtttgcttctattgtatatagttcatgacaattac |
300 |
Q |
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| T |
29078240 |
ttggatctacttgcactatctaattataattgtgaaattatttttagaaatggtcccttatcgtggtttgcttctattgtatatagttcttgacaattac |
29078339 |
T |
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| Q |
301 |
aaccctacaagttatttctcaactactactatattgcaagtgaagggcacgtttatttgcagtttttcgataaacattaatttaaacaa |
389 |
Q |
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| T |
29078340 |
aaccctacaagttatttctcaactactactatattgcaagtgaagggcacgtttatttgcagtttttctataaacattaatttaaacaa |
29078428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 29079700 - 29079747
Alignment:
| Q |
381 |
tttaaacaaatgatatatacgaatttgttttctgagagagagatatat |
428 |
Q |
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| T |
29079700 |
tttagacaaatgatatatatgaatttgttttctgagggagagatatat |
29079747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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