View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10633_low_1 (Length: 476)
Name: NF10633_low_1
Description: NF10633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10633_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 45684249 - 45683998
Alignment:
| Q |
17 |
acttgtcagatcaagatcaaagattctccatgtcttcccctttaattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaat |
116 |
Q |
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| T |
45684249 |
acttgtcagatcaagatcaaagattctccatgtcttcccctttaattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaat |
45684150 |
T |
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| Q |
117 |
tgtttaccaactcatcctttgatttaatgtattctataatatttatcagacataaatatccatcgctttgtgc-ttttgatatttttgctctcacttttg |
215 |
Q |
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| T |
45684149 |
tgtttaccaactcatcctttgatctaatgtattctataatatttatcagacataaatatccatcgctttgtgctttttgatatttttgctctcacttttg |
45684050 |
T |
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| Q |
216 |
aacctatttagtcttcgcacctgcannnnnnnnggttactatttatggaatc |
267 |
Q |
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| T |
45684049 |
aacctatttagtcttcgcgcctgcattttttttggttactatttatggaatc |
45683998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 288 - 476
Target Start/End: Complemental strand, 45683917 - 45683729
Alignment:
| Q |
288 |
cacttcgatgttgtttccatcgactttcatgtgctaattagaaacatttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
387 |
Q |
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| T |
45683917 |
cacttagatgttgtttccatcgactttcatgtgctaatcagaaacgtttgttgtaatcttcttggcaggcggactctgaagtgcatatacattggaaagg |
45683818 |
T |
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| Q |
388 |
tgctgctgagatagttctaggaacatgtacccaatatcttgattcaaatggtcaacgacaatctattgaagaagagaaggttaggaata |
476 |
Q |
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| T |
45683817 |
tgctgctgagatagttctaggaacatgtacccaatatcttgattcaaatggtcaacgacaatctattgaagaagagaaggttaggaata |
45683729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 407
Target Start/End: Original strand, 16691130 - 16691185
Alignment:
| Q |
352 |
gcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttctag |
407 |
Q |
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| T |
16691130 |
gcaggctgactctgatgttcatatacattggaaaggtgctgctgaaattgttctag |
16691185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 350 - 474
Target Start/End: Original strand, 1443415 - 1443539
Alignment:
| Q |
350 |
tggcaggcggactctgaagtgcatatacattggaaaggtgctgctgagatagttctaggaacatgtacccaatatcttgattcaaatggtcaacgacaat |
449 |
Q |
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| T |
1443415 |
tggcaggtggactctggagtgcatatacactggaaaggagctgcagaaatagttctaggagcatgtacccaatatcttgattcaaatagtcacctgcaat |
1443514 |
T |
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| Q |
450 |
ctattgaagaagagaaggttaggaa |
474 |
Q |
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| T |
1443515 |
ccatcgaacaagagaaggttaggaa |
1443539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 1443097 - 1443193
Alignment:
| Q |
40 |
ttctccatgtcttcccctttaattctgagaaaaaacgaggtggtgttgctgtgaaactggtaatcccttgataaaattgtttaccaactcatccttt |
136 |
Q |
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| T |
1443097 |
ttcttcatgtctttccattcaattccgagaaaaaacgaggcggtgttgctctgaagctggtaataatttgatcaaaatatttaccaattcatccttt |
1443193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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