View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10633_low_6 (Length: 240)
Name: NF10633_low_6
Description: NF10633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10633_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4046509 - 4046287
Alignment:
| Q |
1 |
tcaatttgttgcagcaagaaaagaaattaatactttaaaattgttaagacatcctcacattatacaagtttatgaagtgatagaaaccccaagacatata |
100 |
Q |
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| T |
4046509 |
tcaatttgttgcagtaagaagagaaattaatactttaaaattgttaaggcatcctcacattatacaagtttatgaggtgatagaaaccctaacgaatata |
4046410 |
T |
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| Q |
101 |
tatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttcagcagg |
200 |
Q |
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| T |
4046409 |
tatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttcagcagg |
4046310 |
T |
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| Q |
201 |
tataaactctacggatttagatt |
223 |
Q |
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|||||||||||||||||| |||| |
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| T |
4046309 |
tataaactctacggatttggatt |
4046287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 17404197 - 17404321
Alignment:
| Q |
81 |
tagaaaccccaagacatatatatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggttgcacgaagatgaagc |
180 |
Q |
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| T |
17404197 |
tagaaaccccaactgatatttatgtggtgatggagtatgtgaaatctggagaactttttgattacatagtagaaaagggtaggcttcaagaagatgaagc |
17404296 |
T |
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| Q |
181 |
gcgcaaattttttcagcaggtataa |
205 |
Q |
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|||| || || |||||||||||| |
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| T |
17404297 |
tcgcagtttcttccagcaggtataa |
17404321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 4054846 - 4054742
Alignment:
| Q |
101 |
tatgttattatggagtatatggaatctggggagctttttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttcagcagg |
200 |
Q |
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| T |
4054846 |
tatgttgtgatggagtatgtgaaatccggagagctctttgattacattgtagaaaagggtaggctacaagaagatgaagcccgcagtttcttccagcagg |
4054747 |
T |
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| Q |
201 |
tataa |
205 |
Q |
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||||| |
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| T |
4054746 |
tataa |
4054742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 45866055 - 45865987
Alignment:
| Q |
137 |
tttgattacatagtagaaaagggtaggttgcacgaagatgaagcgcgcaaattttttcagcaggtataa |
205 |
Q |
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| T |
45866055 |
tttgactacatagcacaaaagggtaggttgcaagaaaacgaagctcgcacattcttccagcaggtataa |
45865987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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