View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10634_high_1 (Length: 251)
Name: NF10634_high_1
Description: NF10634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10634_high_1 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 35542298 - 35542538
Alignment:
| Q |
11 |
cagagacatttccaaaggattacgacatatttaaaaatccaattaatccaaatacaactactggtaacggtgtttacatgtttaataaagatgagattgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35542298 |
cagagacatttccaaaggattacgacatatttaaaaatccagttaatccaaatacaactaccggtaacggtgtttacatgtttaataaagatgagattgt |
35542397 |
T |
|
| Q |
111 |
tgatgtgatactacagaatgcaaaccagttacatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatgga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35542398 |
tgatgtgatactacagaatgcaaaccagttacatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatgga |
35542497 |
T |
|
| Q |
211 |
gaagggaaattcaaaccacgtgatgcgaaaagtttcaattt |
251 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35542498 |
gaagggaaattcaaaccacttgatgcgaaaagtttcaattt |
35542538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 35509603 - 35509809
Alignment:
| Q |
11 |
cagagacatttccaaaggattacgacatatttaaaaatccaattaatccaaatacaactactggtaacggtgtttacatgtttaataaagatgagattgt |
110 |
Q |
| |
|
|||||| |||||||| |||||| |||||||||||||||||| | |||||||| |||||||| || || |||||||||| ||| | ||||| |||| |
|
|
| T |
35509603 |
cagagagatttccaatggattatgacatatttaaaaatccagtgaatccaaacacaactaccggcaatggtgtttacacgttccagttgaatgaggttgt |
35509702 |
T |
|
| Q |
111 |
tgatgtgatactacagaatgcaaaccagttacatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatgga |
210 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35509703 |
tgatgtgatactacaaaatgcaaaccagttaaatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggt |
35509802 |
T |
|
| Q |
211 |
gaaggga |
217 |
Q |
| |
|
||||||| |
|
|
| T |
35509803 |
gaaggga |
35509809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 35527816 - 35528010
Alignment:
| Q |
27 |
ggattacgacatatttaaaaatccaattaatccaaatacaactactggtaacggtgtttacatgtttaataaagatgagattgttgatgtgatactacag |
126 |
Q |
| |
|
||||| ||| |||||||||| ||| ||||||||| ||||| || |||||||||||||||| |||| | ||||| ||||||||||||||||||| |
|
|
| T |
35527816 |
ggatttcgatatatttaaaactccggttaatccaagtacaataaccggtaacggtgtttacacgtttcagttgaatgaggttgttgatgtgatactacaa |
35527915 |
T |
|
| Q |
127 |
aatgcaaaccagttacatgggaatggtagtgaaattcatccatggcatttgcatggacatgatttttgggttttgggatatggagaagggaaatt |
221 |
Q |
| |
|
||||||||| ||| | | |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35527916 |
aatgcaaacatgttgaaagagaatactagtgaagttcatccatggcatttacatggacatgatttttgggttttgggatatggtgaagggaaatt |
35528010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 35953808 - 35953845
Alignment:
| Q |
189 |
tttttgggttttgggatatggagaagggaaattcaaac |
226 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35953808 |
tttttgggttttgggatatggagaaaggaaattcaaac |
35953845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University