View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10634_low_3 (Length: 260)
Name: NF10634_low_3
Description: NF10634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10634_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 40380423 - 40380654
Alignment:
| Q |
15 |
gaacaacagaaaattgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaat |
114 |
Q |
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| T |
40380423 |
gaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaat |
40380522 |
T |
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| Q |
115 |
tagaacgaacattgtgacgggctcatagatttcgcgttctttggtttgatggtgacgacattggatgcagctgtttctcgaaacaatgttgctaataatt |
214 |
Q |
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| T |
40380523 |
tagaacgaacattgtgacgggctcatagatttcgcgttctttggtttgatggtgacgacattggatgcagctgtttctcgaaacaatgttgctaataatt |
40380622 |
T |
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| Q |
215 |
gtgttgttacataatagtggattggttggttg |
246 |
Q |
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| T |
40380623 |
gtgttgttacataatagtggattggttggttg |
40380654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 40391764 - 40391995
Alignment:
| Q |
15 |
gaacaacagaaaattgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaat |
114 |
Q |
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| T |
40391764 |
gaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggacatacaagaat |
40391863 |
T |
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| Q |
115 |
tagaacgaacattgtgacgggctcatagatttcgcgttctttggtttgatggtgacgacattggatgcagctgtttctcgaaacaatgttgctaataatt |
214 |
Q |
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| T |
40391864 |
tagaacgaacattgtgacgggctcatagatttcgcgttctttggtttgatggcgacgacattggatgcagctgtttctcgaaacaatgttgccaacaatt |
40391963 |
T |
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| Q |
215 |
gtgttgttacataatagtggattggttggttg |
246 |
Q |
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| T |
40391964 |
gtgttgttacataataatgaattggttggttg |
40391995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 41054685 - 41054448
Alignment:
| Q |
15 |
gaacaacagaaaattgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggac--atacaaga |
112 |
Q |
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| T |
41054685 |
gaacaacagaagactgctttggaatcacagttgattattttaagtgaagattgtgatgaacttggacgagggacaattg-ttttgggaacgcacacaagg |
41054587 |
T |
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| Q |
113 |
attagaacgaacattgtgacgggctcata-----gatttcgcgttctttggtttgatggtgacgacattggatgcagctgtttctcgaaacaatgttgct |
207 |
Q |
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| T |
41054586 |
attaaaatgaacattgtgatgatctcatcatattgattttgtgctctttggtttgatggcgatgacaatggatgcagcttttgctcaaaacaatgttgcc |
41054487 |
T |
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| Q |
208 |
aataattgtgttgttacataatagtggattggttggttg |
246 |
Q |
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| T |
41054486 |
aataattgtgttgttacataatagtggattggttggttg |
41054448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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