View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10634_low_4 (Length: 253)
Name: NF10634_low_4
Description: NF10634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10634_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 7141216 - 7141079
Alignment:
| Q |
99 |
tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatcc |
198 |
Q |
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| T |
7141216 |
tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggctaccactttgttggactctcaaaagaacatcc |
7141117 |
T |
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| Q |
199 |
acaagatcttccttctcaatttcactcttgttaccttc |
236 |
Q |
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| T |
7141116 |
acaagatcttccttctcaatttcactcttgttaccttc |
7141079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 7141286 - 7141214
Alignment:
| Q |
1 |
ccttaaaaccataggctaaaatatttgtgcagaatttaatggaaaaacaaaggaaataggaaattagggttat |
73 |
Q |
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| T |
7141286 |
ccttaaaaccataggctaaaatatttgtgcagaatttaatggaaaaacaaaggaaataggaaattagggttat |
7141214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 7153046 - 7152924
Alignment:
| Q |
100 |
ataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatcca |
199 |
Q |
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| T |
7153046 |
ataagttcattgtaactaacccaaatcacagctttgatgttgttggttgttattttgatatcaaggttatcactttgttggactcgcaaaagaacatcta |
7152947 |
T |
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| Q |
200 |
caagatcttccttctcaatttca |
222 |
Q |
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| T |
7152946 |
gaagatcttcgttatcaacttca |
7152924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 7130839 - 7130752
Alignment:
| Q |
122 |
aaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatccacaagatcttc |
209 |
Q |
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| T |
7130839 |
aaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggattctcaaaagcacatcaacaagatcttc |
7130752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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