View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10634_low_6 (Length: 230)
Name: NF10634_low_6
Description: NF10634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10634_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35528097 - 35528321
Alignment:
| Q |
1 |
cattaaggtttaaggcagataaccctggtgtttgggcatttcattgtcacattgaaccacatttgcatatgggaatgggtgttatttttgctgaggctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
35528097 |
cattaaggtttaaggcagataaccctggtgtttgggcatttcattgtcacattgaaccacatttgcatatgggaatgggtgttatttttgctgaaggtgt |
35528196 |
T |
|
| Q |
101 |
tcataaaattaggaaagtacctacagaagctcttacttgtggtgctacagccaagatgttcctaaatgatactctacactaagattagttactcatgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |
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| T |
35528197 |
tcataaaattaggaaagtacctacagaagctcttacttgtggtgctacagccaagatgttcctaaacgataccctacactaagactagttactcatgtca |
35528296 |
T |
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| Q |
201 |
aaccctaatttcctaagagtgtttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
35528297 |
aaccctaatttcctaagagtgtttt |
35528321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 35542592 - 35542812
Alignment:
| Q |
1 |
cattaaggtttaaggcagataaccctggtgtttgggcatttcattgtcacattgaaccacatttgcatatgggaatgggtgttatttttgctgaggctgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
35542592 |
cattaaggtttaaggcagataaccctggtgtttgggcatttcattgtcacattgaaccacatttgcatatgggaatgggtgttatttttgctgaaggtgt |
35542691 |
T |
|
| Q |
101 |
tcataaaattaggaaagtacctacagaagctcttacttgtggtgctacagccaagatgttcctaaatgatactctacactaagattagttactcatgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || || | ||| ||||||||||||||| |
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| T |
35542692 |
tcataaaattaggaaagtacctacagaagctcttacttgtggtgctacagccaagatgctcctaaatgatacccttcattgagactagttactcatgtca |
35542791 |
T |
|
| Q |
201 |
aaccctaatttcctaagagtg |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
35542792 |
aaccttaatttcctaagagtg |
35542812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 35509903 - 35510064
Alignment:
| Q |
4 |
taaggtttaaggcagataaccctggtgtttgggcatttcattgtcacattgaaccacatttgcatatgggaatgggtgttatttttgctgaggctgttca |
103 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35509903 |
taaggtttaaggcagataatcctggtgtttgggcatttcattgtcacattgaaccacatttgcatatgggaatgggtgttatttttgctgaggctgttca |
35510002 |
T |
|
| Q |
104 |
taaaattaggaaagtacctacagaagctcttacttgtggtgctacagccaagatgttcctaa |
165 |
Q |
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|||| ||||||| |||||| ||||||||||| ||||||||||||||| |||||||||||| |
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| T |
35510003 |
taaagttaggaacatacctaaagaagctcttaaatgtggtgctacagcctagatgttcctaa |
35510064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 35953927 - 35954092
Alignment:
| Q |
1 |
cattaaggtttaaggcagataaccctggtgtttgggcatttcattgtcacattgaaccacatttgcatatgggaatgggtgttatttttgctgaggctgt |
100 |
Q |
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|
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| | ||| |
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| T |
35953927 |
cattaaggtttaaggcagataatcctggagtttgggcatttcattgtcatgttgaaccacatttgcatatggaaatgggtgttatatttgctgatggtgt |
35954026 |
T |
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| Q |
101 |
tcataaaattaggaaagtacctacagaagctcttacttgtggtgctacagccaagatgttcctaaa |
166 |
Q |
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| |||||||| ||||| |||| ||||| |||| | |||||| ||| |||| |||| ||||||||| |
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| T |
35954027 |
ttataaaatttggaaaataccgacagacactctaaattgtggcgctccagcgaagaagttcctaaa |
35954092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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