View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10635_low_1 (Length: 429)

Name: NF10635_low_1
Description: NF10635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10635_low_1
NF10635_low_1
[»] chr3 (7 HSPs)
chr3 (6-150)||(41733232-41733371)
chr3 (156-253)||(41733072-41733169)
chr3 (145-243)||(33440941-33441039)
chr3 (331-406)||(41732960-41733035)
chr3 (342-405)||(33440263-33440327)
chr3 (6-65)||(33441180-33441239)
chr3 (101-150)||(33441115-33441167)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 7e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 41733371 - 41733232
Alignment:
Q  6 cataggccgtctgaatttgtattcgtttcatgttatacgcataccaatgttactcaatttatgagaagagaagctacatttccaaacagagacttggtca 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  41733371 cataggccgtctaaatttgtattcgtttcatgttatacgcataccaatgttactcaatttatgagaag-----ctacatttccaaacagagacttggtca 41733277  T
Q  106 tttttaacacatttgaacactcaataagttaatattcataaatta 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41733276 tttttaacacatttgaacactcaataagttaatattcataaatta 41733232  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 41733169 - 41733072
Alignment:
Q  156 tatggatatggtatggatcacgaggttgcacatgtcttcctcataatgtgtgcgctatatggatcatcattactcaaattggtgagacctgaaatatt 253  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41733169 tatggatatggtatggatcacgaggttgcacatgtcttccttataatgtgtgcgctatatggatcatcattactcaaattggtgagacctgaaatatt 41733072  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 33441039 - 33440941
Alignment:
Q  145 aaattatctattatggatatggtatggatcacgaggttgcacatgtcttcctcataatgtgtgcgctatatggatcatcattactcaaattggtgagac 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| |||||||| |||||||||||||||||    
T  33441039 aaattatctattatggatatggtatggatcacgaggttgcacatgatttccttataatgtgtgcgctatatgaatcatcatcactcaaattggtgagac 33440941  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 331 - 406
Target Start/End: Complemental strand, 41733035 - 41732960
Alignment:
Q  331 gttagggaagggaaatatttgtaacttacgtcgcatccaatttatcaagtaaaaatatacagtgctagtattatta 406  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41733035 gttagggaagggaaatatttgtaacttacctcgcatccaatttatcaagtaaaaatatacagtgctagtattatta 41732960  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 33440327 - 33440263
Alignment:
Q  342 gaaatatttgtaacttacgtcgcat-ccaatttatcaagtaaaaatatacagtgctagtattatt 405  Q
    |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||    
T  33440327 gaaatatttgtaacttacctcgcattccaatttatcaaataaaaatatacagtgctagtattatt 33440263  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 33441239 - 33441180
Alignment:
Q  6 cataggccgtctgaatttgtattcgtttcatgttatacgcataccaatgttactcaattt 65  Q
    |||| |||||||||||||||||| |||||||||| | ||||||||||||| ||| |||||    
T  33441239 cataagccgtctgaatttgtatttgtttcatgtttttcgcataccaatgtgactgaattt 33441180  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 33441167 - 33441115
Alignment:
Q  101 ggtcatttttaacacatttgaacactc---aataagttaatattcataaatta 150  Q
    |||||||||||||||||||||||||||   ||||||||||| |||||||||||    
T  33441167 ggtcatttttaacacatttgaacactcctaaataagttaatgttcataaatta 33441115  T

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