View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10635_low_2 (Length: 379)
Name: NF10635_low_2
Description: NF10635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10635_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 9871529 - 9871180
Alignment:
| Q |
20 |
taaggaacttgataattggagacaatgctccatttagagtaatccaaagcactcttgaattacttgggtatgtgccttaatatattcataaaaaccaaat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9871529 |
taaggaacttgataattggagacaatgctccatttagagtaatccaaagcactcttgaattacttgggtatgtgccttaatttattcataaaaaccaaat |
9871430 |
T |
|
| Q |
120 |
aatccaaagtctctacttcttttctaacaacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggt |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9871429 |
aatccaaagtctctacttcttttctaaccacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggt |
9871330 |
T |
|
| Q |
220 |
ggtaacctcactgcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataactcggcttttcgtactgcctgttattggattat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9871329 |
ggtaacctcactgcaggcttgaaatcatcaagtgtaaaaccattgactctcatctgcatcatcataactcggcttttcgtactgcctgttattggattat |
9871230 |
T |
|
| Q |
320 |
ttattgtgaaagccgcggctaattacggctttctcccagtggatcctttg |
369 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9871229 |
ttattgtgaaagctgcggctaattacggctttctcccagtggatcctttg |
9871180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 9897164 - 9896813
Alignment:
| Q |
20 |
taaggaacttgataattggagacaatgctccatttagagtaatccaaagcactcttgaattacttgggtatgtgccttaatatattcataaaaaccaaat |
119 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||||| |
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| T |
9897164 |
taaggaagttaataattggagacaatgctccatttagagtaatccaaagcactcttgaattacttgggtatctgccttaatttcttcataaaaatcaaat |
9897065 |
T |
|
| Q |
120 |
aatcc--aaagtctctacttcttttctaacaacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttg |
217 |
Q |
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| ||| |||||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||| |
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| T |
9897064 |
agtccgtaaagtctctacttcttttttaaccacacaattatgtgtttaaacttaattctttgcaggaacggaacaattccttgcatcacgcttttgcttg |
9896965 |
T |
|
| Q |
218 |
gtggtaacctcactgcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataactcggcttttcgtactgcctgttattggatt |
317 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||| |
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| T |
9896964 |
gtggtaacctcacggcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataacccggcttttcctgctacctgttattggatt |
9896865 |
T |
|
| Q |
318 |
atttattgtgaaagccgcggctaattacggctttctcccagtggatcctttg |
369 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
9896864 |
gtttattgtgaaagccgcggctagttacggctttctcccagtggatcctttg |
9896813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 9864908 - 9865256
Alignment:
| Q |
20 |
taaggaacttgataattggagacaatgctccatttagagtaatccaaagcactcttgaattacttgggtatgtgccttaatatattcataaaaaccaaat |
119 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||| || || |||||| ||||||||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
9864908 |
taaggaacctaataattggtgacaatgctccattcagtgttatccaagacactcttgaattactagggtatgtgccttcaa----tcataaaaaccaaat |
9865003 |
T |
|
| Q |
120 |
aatcc--aaagtctctacttcttttctaac-aacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgctt |
216 |
Q |
| |
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| ||| ||||| ||||||| ||||||||| || | |||||||||||||||||||| ||||| ||| |||||||||||||| |||||||| ||||||||| |
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| T |
9865004 |
agtccttaaagtgtctactttttttctaaccaaaacaattatttgtttaaacttaactcttttcaggaatggaacaattccctgcatcacccttttgctt |
9865103 |
T |
|
| Q |
217 |
ggtggtaacctcactgcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataactcggcttttcgtactgcctgttattggat |
316 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||| ||||||||||||| |
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| T |
9865104 |
ggtggtaaactcactgcaggcttgaaatcatcaagtgtaaaaccattgacactgatcagcatcattataactcggctttttgtactacctgttattggat |
9865203 |
T |
|
| Q |
317 |
tatttattgtgaaagccgcggctaattacggctttctcccagtggatcctttg |
369 |
Q |
| |
|
| ||||||||||||||||| || || | |||| |||||||||||||||||||| |
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| T |
9865204 |
tgtttattgtgaaagccgcagcgaacttcggcattctcccagtggatcctttg |
9865256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 31 - 369
Target Start/End: Complemental strand, 9907402 - 9907066
Alignment:
| Q |
31 |
ataattggagacaatgctccatttagagtaatccaaagcactcttgaattacttgggtatgtgccttaatatattcataaaaaccaaataatcc--aaag |
128 |
Q |
| |
|
||||| || ||||||||||||||||| || |||||| |||||||||||||||||||||||| |||| | || |||| || ||||| ||| |||| |
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| T |
9907402 |
ataatcggtgacaatgctccatttagtgttatccaagacactcttgaattacttgggtatgtaccttcaa----tcttaaatacaaaatagtccttaaag |
9907307 |
T |
|
| Q |
129 |
tctctacttcttttctaacaacataattatttgtttaaacttaattctttgcagaaatggaacaattccttgcatcacacttttgcttggtggtaacctc |
228 |
Q |
| |
|
| ||||||| ||||||||| | | | |||||||||||||| || ||||| ||| |||||||||||||| |||||||| ||||| || |||||||||||| |
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| T |
9907306 |
tgtctactttttttctaaccaaaacaatatttgtttaaactcaactctttccaggaatggaacaattccctgcatcacccttttactaggtggtaacctc |
9907207 |
T |
|
| Q |
229 |
actgcaggcttgaaatcatcaagtgtaaaaccattgacactcatctgcatcatcataactcggcttttcgtactgcctgttattggattatttattgtga |
328 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||| |||||||||||||| |||||||||| |
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| T |
9907206 |
actgcagggttgaaatcatcaagtgtaaaaccattgacactgatcagcatcattataactaggcttttcgtactacctgttattggattgtttattgtga |
9907107 |
T |
|
| Q |
329 |
aagccgcggctaattacggctttctcccagtggatcctttg |
369 |
Q |
| |
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|||||| ||| | || |||| |||||||||||||||||||| |
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|
| T |
9907106 |
aagccgtggcgagtttcggcattctcccagtggatcctttg |
9907066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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