View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10635_low_3 (Length: 334)
Name: NF10635_low_3
Description: NF10635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10635_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 28 - 329
Target Start/End: Complemental strand, 64966 - 64665
Alignment:
| Q |
28 |
ctcgaatggtgtagatcttctttagccatttgttatcttgcaactcgtacttatccatcattgctccccaatcagaatcaaagtcatcagtagtgatagt |
127 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
64966 |
ctcgaatggagtagatcttctttagccatttgttatcttgcaactcgtacttatctatcattgctccccaatcagaatcaaagtcataagaagtgatagt |
64867 |
T |
|
| Q |
128 |
ttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaactttcttctcaatatgccacatacaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
64866 |
ttggtgaatgcacttgtgaaattgatttttaaactcgctatgttgatgatagatttggttcaagtactctggaactttcttctcaatatgccacatacaa |
64767 |
T |
|
| Q |
228 |
taatgatgattcacctctggaaaaacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatcctttgctt |
327 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
64766 |
taatgatgattcacctctagaaaaacctttgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatccattgctt |
64667 |
T |
|
| Q |
328 |
ct |
329 |
Q |
| |
|
|| |
|
|
| T |
64666 |
ct |
64665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 118 - 309
Target Start/End: Complemental strand, 22639522 - 22639332
Alignment:
| Q |
118 |
tagtgatagtttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaactttcttctcaatatg |
217 |
Q |
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||||||| | ||||||||| ||||||| ||||||| ||||||| | ||| |||||||||| ||||| | ||||||||||||||||||| || ||||| | |
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|
| T |
22639522 |
tagtgattgattggtgaatacacttgtaaaattgacttttaaaatcactgtgttcatgatggatttcgctcaagtactctggaacttt-ttttcaatgcg |
22639424 |
T |
|
| Q |
218 |
ccacatacaataatgatgattcacctctggaaaaacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggac |
309 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| || |||||||||||||| |||| | || | || | ||||||||||||||||||| |
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| T |
22639423 |
ccacatacagtaatgatgattaacattcggaaacactcttgcaactgcattagtgatagcactggcctggtatgtgataatagttttaggac |
22639332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 48773441 - 48773130
Alignment:
| Q |
18 |
atccactttgctcgaatggtgtagatcttctttagccatttgttatcttgcaactcgtacttatccatcattgctccccaatcagaatcaaagtcatcag |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||| || |
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|
| T |
48773441 |
atccactttgctcgaatggagtagatcttctttagccatttgttatcttgcaactcataattatctatcattgctccccaataagaatcaaagtcataag |
48773342 |
T |
|
| Q |
118 |
tagtgatagtttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaactttcttctcaatatg |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
48773341 |
tagtgatagtttgatgaatgcacttgtgaaattgatttttaaacttactatgttcatgataaatttggttcaagtactctcgaactttcttctcaatatg |
48773242 |
T |
|
| Q |
218 |
ccacatacaataatgatgattcacctctggaaaaacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactcca |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48773241 |
ccacatacaatagtgatgattcacctctggaaaaacctgtgcagctgcattagaaatagaagtgtcttgatcagtgataatagttttaggaataactcca |
48773142 |
T |
|
| Q |
318 |
tcctttgcttct |
329 |
Q |
| |
|
||| || ||||| |
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|
| T |
48773141 |
tccatttcttct |
48773130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 329
Target Start/End: Complemental strand, 51166963 - 51166661
Alignment:
| Q |
28 |
ctcgaatggtgtagatcttctttagccatttgttatcttgcaactcgtacttatccatcattgctccccaa-tcagaatcaaagtcatcagtagtgatag |
126 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||| |
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|
| T |
51166963 |
ctcgaatggagtagatattctttagccatttgttatcttgcaactcgtacttatttatcattgctcccgaaatcagaatcaaagtcatcataagtgatag |
51166864 |
T |
|
| Q |
127 |
tttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaactttcttctcaatatgccacataca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
51166863 |
tttggtgaatgcacttgtgaaattgatttttaaactcgccatgttcatgatagatttggttcaagtactctggaactttattctcgatatgccacataca |
51166764 |
T |
|
| Q |
227 |
ataatgatgattcacctctggaaaaacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatcctttgct |
326 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
51166763 |
ataatgatgattcacctttggaaaaacctttgcaactgcattagaaatagaagtgtcttaatcagtgataatagttttaggactaactccatccattgct |
51166664 |
T |
|
| Q |
327 |
tct |
329 |
Q |
| |
|
||| |
|
|
| T |
51166663 |
tct |
51166661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 123 - 329
Target Start/End: Complemental strand, 16081234 - 16081028
Alignment:
| Q |
123 |
atagtttggtgaatgcacttgtgaaattgatttttaaacttactatgttcatgatagatttggttcaagtactctggaactttcttctcaatatgccaca |
222 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
16081234 |
atagtttggcgaatgcacttctgaaattgatttttaaactcactatgttcatgatagatttggttcaagtactctggaactttcttctgaatatgccaca |
16081135 |
T |
|
| Q |
223 |
tacaataatgatgattcacctctggaaaaacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatcctt |
322 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
16081134 |
tacaatagtgatgattcacctctggaaaaacctgtgcaactgcattagaaatagaagtgtcttgatcagtgataatagttttaggactaactccatccat |
16081035 |
T |
|
| Q |
323 |
tgcttct |
329 |
Q |
| |
|
||||||| |
|
|
| T |
16081034 |
tgcttct |
16081028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 60 - 307
Target Start/End: Original strand, 44885111 - 44885358
Alignment:
| Q |
60 |
ttatcttgcaactcgtacttatccatcattgctccccaatcagaatcaaagtcatcagtagtgatagtttggtgaatgcacttgtgaaattgatttttaa |
159 |
Q |
| |
|
|||||||||||| | || ||||| | ||||||| |||| ||||| ||||| || ||| | || |||| ||||||||||||||||| ||| |||||||||| |
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|
| T |
44885111 |
ttatcttgcaacccatatttatcaaccattgcttcccattcagagtcaaattcttcaattgtaatagattggtgaatgcacttgtaaaaatgatttttaa |
44885210 |
T |
|
| Q |
160 |
acttactatgttcatgatagatttggttcaagtactctggaactttcttctcaatatgccacatacaataatgatgattcacctctggaaaaacctgtgc |
259 |
Q |
| |
|
| | ||| ||| |||||||||| || | || || |||||||||||| | ||||||||||||||| |||||||| ||||| |||| |||||| ||| ||| |
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|
| T |
44885211 |
attcactgtgtccatgatagatatgatccatgtgctctggaactttttcctcaatatgccacatgcaataatggtgattaacctttggaaacacccttgc |
44885310 |
T |
|
| Q |
260 |
aactgcattagaaatagaagtgtcttgatcagtgataatagttttagg |
307 |
Q |
| |
|
||||||||| | |||| ||||| ||| || ||||||| ||||||||| |
|
|
| T |
44885311 |
aactgcattggtgatagcagtgtgttggtctgtgataacagttttagg |
44885358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 19329789 - 19329664
Alignment:
| Q |
157 |
taaacttactatgttcatgatagatttggttcaagtactctggaactttcttctcaatatgccacatacaataatgatgattcacctctggaaaaacctg |
256 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| | |||| |||||||||| |
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|
| T |
19329789 |
taaactcactatgttcatgctagatatggtttaagtactctagaactttcttctcattatgccacatacaataatgatgaatgacctagggaaaaacctt |
19329690 |
T |
|
| Q |
257 |
tgcaactgcattagaaatagaagtgt |
282 |
Q |
| |
|
| ||||||||||||||||||| |||| |
|
|
| T |
19329689 |
tacaactgcattagaaatagatgtgt |
19329664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 8835555 - 8835600
Alignment:
| Q |
132 |
tgaatgcacttgtgaaattgatttttaaacttactatgttcatgat |
177 |
Q |
| |
|
||||||||||||| || |||||||||||| | |||||||||||||| |
|
|
| T |
8835555 |
tgaatgcacttgtaaatttgatttttaaattcactatgttcatgat |
8835600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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