View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10635_low_4 (Length: 318)
Name: NF10635_low_4
Description: NF10635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10635_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 1841103 - 1841398
Alignment:
| Q |
19 |
ctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaaaattttagaaaaatatgatcaaaat |
118 |
Q |
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| T |
1841103 |
ctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaaaattttagaaaaatatgatcaaaat |
1841202 |
T |
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| Q |
119 |
atgttatacgaataatggacccgatgaaactagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcc |
218 |
Q |
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| T |
1841203 |
atattatacgaataatggatccgatgaaactagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcc |
1841302 |
T |
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| Q |
219 |
tgtcttcgttttctctctgccattatatgatcaatacactgtgaactgcttctacctctcttcactctattttgttgatttattttcatctcactc |
314 |
Q |
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| T |
1841303 |
tgtcttcgttttctctctgccattatatgatcaatacactgtgaactgcttctacctctcttcactccattttgttgatttattttcatttcactc |
1841398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 149 - 285
Target Start/End: Original strand, 1823912 - 1824048
Alignment:
| Q |
149 |
tagtgacaaatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcctgtcttcgttttctctctgccattatatga |
248 |
Q |
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| T |
1823912 |
tagttacaaatttaccttgctcaatccaggaatagtagccgaaagtgcaatgaatttttcagacaattcttgtctcctttttctctctgccattatatga |
1824011 |
T |
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| Q |
249 |
tcaatacactgtgaactgcttctacctctcttcactc |
285 |
Q |
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| T |
1824012 |
tcaatacattgtgaactgcttctacctttcttcactc |
1824048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 1820839 - 1820920
Alignment:
| Q |
19 |
ctttaagttgtttcacataatcaattgcttctcgaagtattgaagccttgtctgtctataaaaatggaatattaaaatttta |
100 |
Q |
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| T |
1820839 |
ctttaagttgtttcacataatcaatcgcttctcgaagtaatgaagccttgtccatctataaagaaggaatcgtaaaatttta |
1820920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 4701117 - 4701153
Alignment:
| Q |
99 |
tagaaaaatatgatcaaaatatgttatacgaataatg |
135 |
Q |
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| T |
4701117 |
tagaaaaatatgatcaaaacatgttatatgaataatg |
4701153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 53801064 - 53801036
Alignment:
| Q |
98 |
ttagaaaaatatgatcaaaatatgttata |
126 |
Q |
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| T |
53801064 |
ttagaaaaatatgatcaaaatatgttata |
53801036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 12514399 - 12514363
Alignment:
| Q |
99 |
tagaaaaatatgatcaaaatatgttatacgaataatg |
135 |
Q |
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| T |
12514399 |
tagaaaaatatgattaaaatatgttatatgaataatg |
12514363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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