View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10636_high_1 (Length: 401)
Name: NF10636_high_1
Description: NF10636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10636_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 48617081 - 48616708
Alignment:
| Q |
17 |
aggaagtatcagaacacaacttctgtatggatcccctgcttcaagttcaactcatcatcatatcctaatttaccactcnnnnnnnctaagaatgcctgat |
116 |
Q |
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| T |
48617081 |
aggaagtatcagaacacaacttctgtatggatcccctgcttcaagttcaactcatcatcatatcctaatttaccactcaataaaactaagaatgcctgat |
48616982 |
T |
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| Q |
117 |
ccatcttttgttgtttcttcattatgagacactgtcacttatttatattcaacttggtgggattttaaaatcgtaattctttttgtggatgaaatcaatt |
216 |
Q |
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| T |
48616981 |
ccatcttttgttgtttcttcattatgagacactgtcacttatttatattcaacttggtgggattttaaaatcttaattctttttgtggatgaaatcaatt |
48616882 |
T |
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| Q |
217 |
aattttcaatattttatattaagtttccatatatcttttacatagataactctaatttcttacagtgtaacaaataactctactttgctttcaggtaatt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
48616881 |
aattttcaatattttatattaagtttccatatatcttttacatagataactctaatttcttacagtgaaacaaataactctaatttgctttcagctaatt |
48616782 |
T |
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| Q |
317 |
attaactgattattaaatcagggaaatcgttgtatatagcgaaattaaattcgcttaatctcatgttcccgatg |
390 |
Q |
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||||| |||||||||||| ||||| |||||| ||||| |||| |||||||| |||| |||||||||||||| |
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| T |
48616781 |
tttaacatattattaaatcaaggaaaacgttgtttatagtgaaaagaaattcgcataatttcatgttcccgatg |
48616708 |
T |
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