View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10636_high_14 (Length: 224)
Name: NF10636_high_14
Description: NF10636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10636_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 32059713 - 32059575
Alignment:
| Q |
70 |
gataactgtcctcatgggggtcattacacataatacacgtcgacggacaattaacccctccacagttcaatcttacacgagtaggcaaacatttcctaca |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32059713 |
gataactgtcctcatgggggtcattacacata-tacacgtcgacggacaattaacccctctacagttcaatcttacacgagtaggcaaacatttcctaca |
32059615 |
T |
|
| Q |
170 |
cactcgccacaccatattcttaacttttgggggaactttc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32059614 |
cactcgccacaccatattcttaacttttgggggaactttc |
32059575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 208
Target Start/End: Complemental strand, 39533045 - 39532858
Alignment:
| Q |
21 |
cctgctgtgcgccaaacacctactgctgtacagcagcgggnnnnnnnntgataactgtcctcatgggggtcattacacataatacacgtcgacggacaat |
120 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||| || ||||| |||| | ||||| ||||||||| |
|
|
| T |
39533045 |
cctgctgtacgccacacacctactgctgtacagcagtggaaaaaaatgtgataactgtcctcatgcggatcattgcacaacacgcacgtagacggacaag |
39532946 |
T |
|
| Q |
121 |
taacccctccacagttcaatcttacacgagtaggcaaacatttcctacacactcgccacaccatattcttaacttttgggggaacttt |
208 |
Q |
| |
|
||||||||| | |||| ||| || |||||||||||||||| ||||| || ||||||||||| |||| |||||||| |||||||| |
|
|
| T |
39532945 |
taacccctctccgattcagtctgacgcgagtaggcaaacattctctacaaacacgccacaccatgctcttgacttttggaggaacttt |
39532858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 3237856 - 3237771
Alignment:
| Q |
111 |
gacggacaattaacccctccacagttcaatcttacacgagtaggcaaacatttcctacacactcgccacaccatattcttaacttt |
196 |
Q |
| |
|
|||||||| |||| |||| || ||| | ||||||||| ||||| ||||||| ||||||||||| ||| |||||| |||||||||| |
|
|
| T |
3237856 |
gacggacacataacacctctacggtttagtcttacacgcgtaggtaaacattccctacacactctccaaaccatactcttaacttt |
3237771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 41469768 - 41469707
Alignment:
| Q |
147 |
cgagtaggcaaacatttcctacacactcgccacaccatattcttaacttttgggggaacttt |
208 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| |||||||||||| || || |||||||| |
|
|
| T |
41469768 |
cgagtaggtaaacattctctacacactcgccacaacatattcttaaccttaggtggaacttt |
41469707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University