View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10636_high_2 (Length: 387)
Name: NF10636_high_2
Description: NF10636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10636_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 38868625 - 38868267
Alignment:
| Q |
18 |
cagaacatgagatttatccattttactactaactgattattgagactcaaagaatgagggccagctcagaattctacgtttgattgatgggaattgaatg |
117 |
Q |
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| T |
38868625 |
cagaacatgagatttatccattttactactaactgattattgagactcaaagaatgagggccagctcagaattctacgtttgattgatgggaattgaatg |
38868526 |
T |
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| Q |
118 |
acaattactcagattggaaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcagtttcgaggaagatg |
217 |
Q |
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| T |
38868525 |
acaattactc-gattggaaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcagtttcgaggaagatg |
38868427 |
T |
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| Q |
218 |
ttcacaaattagaacagttatatgcttttaccataatcaaaagtactttggaagactgtaggaatgtctttgagaggaaagtctatataagactagaaga |
317 |
Q |
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| T |
38868426 |
ttcacaaattagaacagttatatgcttttaccataatcaaaagtactttggaagactataggaatgtctttgagaggaaagtctatataagactagaaga |
38868327 |
T |
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| Q |
318 |
taactttgacatattgaaggattcaaagccactagatttgaggccaggttaatttctgtg |
377 |
Q |
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| T |
38868326 |
taactttgacatattgaaggattcaaagccactagatttgagaccaggttaatttctgtg |
38868267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 38806751 - 38806821
Alignment:
| Q |
135 |
aaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatgatcagttt |
206 |
Q |
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| T |
38806751 |
aaagctaaacaaattgaggtttctggatttgtctcggtgtacaatcgaagaggact-taccatgatcagttt |
38806821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 38849502 - 38849438
Alignment:
| Q |
135 |
aaagctaaacaaatcgaggttgctggatttgtcttggtgtacagttgaagaggactataccatga |
199 |
Q |
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| T |
38849502 |
aaagctaaacaaattcaggttgttggatttgtcttagtgtatagttgaagaggacaataccatga |
38849438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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