View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10636_high_3 (Length: 359)
Name: NF10636_high_3
Description: NF10636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10636_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 2097057 - 2097398
Alignment:
| Q |
1 |
ccacagaacccccaacatcagagagaaccaatgatacagccaaaccaagacccctggagaaattaaatcatttcattgcagaaattccaaatggtccaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2097057 |
ccacagaacccccaacatcagagagaaccaatgatacagccaaaccaagacccctggagaaattaaatcatttcattgcagaaattccaaatggttcaca |
2097156 |
T |
|
| Q |
101 |
caacaacgtgccaaactaaa-gccagaccaaaccttggtttttcttagacctaaaactcgtnnnnnnnncctcaaaaactccttcagataaagagccttt |
199 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
2097157 |
caacaacgtgccaaactaaaagccagaccaaactttggtttttcttagacctaagactcgtaaaaaaaac-tcaaaaactccttcagataaagagccttt |
2097255 |
T |
|
| Q |
200 |
gaaactcccacatgattaatcttcagaattgactctatttctagctagcatccgtctccatgttctcctccaaatcaatcaaccctgctttcgccatcgg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2097256 |
gaaactcccacatgattaatcttcagaattgactctatttctagctagcatctgtctccatgttctcctccaaatcaatcaaccctgctttcgccatcgg |
2097355 |
T |
|
| Q |
300 |
tgtcaaagcctgggtcgctgatccaacccagctcacggctgct |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2097356 |
tgtcaaagcctgggtcgctgatccaacccaggtcacggctgct |
2097398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University