View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10636_low_1 (Length: 434)

Name: NF10636_low_1
Description: NF10636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10636_low_1
NF10636_low_1
[»] chr5 (7 HSPs)
chr5 (16-423)||(14773751-14774157)
chr5 (193-420)||(17881020-17881248)
chr5 (211-423)||(15015513-15015727)
chr5 (270-420)||(15048253-15048403)
chr5 (17-184)||(15016059-15016229)
chr5 (61-184)||(17881278-17881400)
chr5 (17-184)||(15048513-15048677)
[»] chr1 (2 HSPs)
chr1 (76-178)||(36876182-36876283)
chr1 (288-419)||(36876445-36876577)
[»] chr4 (6 HSPs)
chr4 (273-423)||(54158964-54159114)
chr4 (297-423)||(53868220-53868346)
chr4 (75-184)||(54159170-54159278)
chr4 (273-423)||(51365876-51366025)
chr4 (77-184)||(53868035-53868141)
chr4 (126-184)||(51366131-51366189)


Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 14774157 - 14773751
Alignment:
Q  16 caggtattttagttgttaccttgagattcctggtaacacgtctttaattattgagcatcatcttattgttgttgaaattcataatgcaggccatattcca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14774157 caggtattttagttgttaccttgagattcctggtaacacgtctttaattattgagcatcatcttattgttgttgaaattcataatgcaggccatattcca 14774058  T
Q  116 aagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgataatttttattgtgacagtgaaagacatttcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14774057 aagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgataatttttattgtgacagtgaaagacatttcat 14773958  T
Q  216 ttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgtgttggcatttatttcttccaattcatgatttatcgttttatttgtag 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14773957 ttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgttttggcatttatttcttccaattcatgattcatcgttttatttgtag 14773858  T
Q  316 gaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctttggcctcatgtgacattgcagttt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  14773857 gaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaacaaggagtctttggcctcatgtgaca-tgcagttt 14773759  T
Q  416 ttgttcat 423  Q
    ||||||||    
T  14773758 ttgttcat 14773751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 193 - 420
Target Start/End: Complemental strand, 17881248 - 17881020
Alignment:
Q  193 tgtgacagtgaaagacatttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtgtgt-tggcatttatttcttccaatt 291  Q
    |||||||| ||||||||||||||||||||| |||||||   |||||||||||| |||  ||||||||||||||| | | | | | |||  ||||||||||    
T  17881248 tgtgacagagaaagacatttcatttctttcgccttttcctgcaccaaagtcttcatttgatgtattcattttgtatatattggaattacatcttccaatt 17881149  T
Q  292 catgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctt 391  Q
    || | || ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||  ||||||||||    
T  17881148 cacggttaatcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggtggagtcacaaagctgctagccaataaggagtctt 17881049  T
Q  392 tggcctcatgtgacattgcagtttttgtt 420  Q
    ||||||||||||||||||| |||||||||    
T  17881048 tggcctcatgtgacattgcggtttttgtt 17881020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 211 - 423
Target Start/End: Complemental strand, 15015727 - 15015513
Alignment:
Q  211 ttcatttctttcaccttttctcacaccaaagtcttaattccatgtattcattttgtg--tgttggcatttatttcttccaattcatgatttatcgtttta 308  Q
    |||| |||||||| ||||||||||||||||||||| |||  |||||||||||||||   | |||  | |||| |||||||||||||  |||| | ||||     
T  15015727 ttcagttctttcaacttttctcacaccaaagtcttcatttgatgtattcattttgtacatattgatacttatatcttccaattcattgtttaccattttg 15015628  T
Q  309 tttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctttggcctcatgtgacatt 408  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||| ||||||| || | |||||||||| ||| |||||||||||||    
T  15015627 tttgtaggaaaacaaaaaatatattgtgctgagagagatttctgaaggtggagttacaaagctgctagcaaacaaggagtctctgggctcatgtgacatt 15015528  T
Q  409 gcagtttttgttcat 423  Q
    |||||||||||||||    
T  15015527 gcagtttttgttcat 15015513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 270 - 420
Target Start/End: Complemental strand, 15048403 - 15048253
Alignment:
Q  270 ttggcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagag 369  Q
    ||||||||||| ||||||| |||| | || ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||    
T  15048403 ttggcatttatatcttccagttcacggttaatcattttgtttgtaggaaaacaaaaaatatcttgtgctgagagagatttctgaaggaggagtcacaaag 15048304  T
Q  370 ctgctggccaccaaggagtctttggcctcatgtgacattgcagtttttgtt 420  Q
    ||||| ||||  ||| |||||||||||||||||||||||||| ||||||||    
T  15048303 ctgctagccaataagaagtctttggcctcatgtgacattgcaatttttgtt 15048253  T

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Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 15016229 - 15016059
Alignment:
Q  17 aggtattttagttgttaccttgagattcctggtaacacgtctttaattattgagcatcatcttattgttgttgaaattcataatgcaggccatattccaa 116  Q
    |||||||||||||||||||||||   ||||||||||||   || ||||||||| ||||||||| |||||||| ||||| || |||||||||||||||  |    
T  15016229 aggtattttagttgttaccttgacgctcctggtaacacaaattaaattattgaccatcatcttgttgttgttcaaattaattatgcaggccatattctga 15016130  T
Q  117 agcttacaatcca---accaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgata 184  Q
    |||||||||||||   || ||| | ||||||| |||||  ||||||||||||||||||| |||||||||||    
T  15016129 agcttacaatccagctacaaatgaagatcgttttgctgccaatgttgttgatatttctacggtaattgata 15016059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 17881400 - 17881278
Alignment:
Q  61 aattattgagcatcatcttattgttgttgaaattcataatgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttg 160  Q
    |||||||||||||||||||||| || ||||| ||||| ||||||| |||||||  |||||||||||||||||||  ||||||| ||||||||||||||||    
T  17881400 aattattgagcatcatcttattcttattgaa-ttcatgatgcaggtcatattctgaagcttacaatccaaccaacgaggatcgctatgctgtaaatgttg 17881302  T
Q  161 ttgatatttctagggtaattgata 184  Q
    |||||||||||| ||||| |||||    
T  17881301 ttgatatttctatggtaaatgata 17881278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 15048677 - 15048513
Alignment:
Q  17 aggtattttagttgttaccttga-gattcctggtaacacgtctttaattattgagcatcatcttattgttgttgaaattcataatgcaggccatattcca 115  Q
    ||||||||||||||||||| ||| ||||| ||||||||   | ||||||||| ||||||||   | ||| |||||| |||||| ||||| ||||||||      
T  15048677 aggtattttagttgttaccatgaagattcttggtaacaaaacattaattatttagcatcat---actgtcgttgaa-ttcatattgcagaccatattctg 15048582  T
Q  116 aagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgata 184  Q
    |||||||||||  ||||||  ||||||||| |||||||||| | || |||||||||||||||| |||||    
T  15048581 aagcttacaatgaaaccaacgaggatcgttttgctgtaaatatcgtcgatatttctagggtaaatgata 15048513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 36876182 - 36876283
Alignment:
Q  76 tcttattgttgttgaaattcataatgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctaggg 175  Q
    |||||||||||||||| |||||||||||||||||||||  ||||||| |||||||||||  ||||||||||||||||||||||||||||||| || ||||    
T  36876182 tcttattgttgttgaa-ttcataatgcaggccatattctgaagcttataatccaaccaacgaggatcgttatgctgtaaatgttgttgatatatccaggg 36876280  T
Q  176 taa 178  Q
    |||    
T  36876281 taa 36876283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 419
Target Start/End: Original strand, 36876445 - 36876577
Alignment:
Q  288 aattcatgattt-atcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaagga 386  Q
    |||||||||||| || ||||| |||| ||||||||| ||||||||| ||||||| ||||||| | ||| ||| |||  ||   ||| |||||  ||||||    
T  36876445 aattcatgattttattgttttgtttgcaggaaaacagaaaatatctcgtgttgaaagagattccagaaggtgaagttgcaagactggtggccgacaagga 36876544  T
Q  387 gtctttggcctcatgtgacattgcagtttttgt 419  Q
    |||||||||||||||||||||||||||||||||    
T  36876545 gtctttggcctcatgtgacattgcagtttttgt 36876577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 423
Target Start/End: Complemental strand, 54159114 - 54158964
Alignment:
Q  273 gcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctg 372  Q
    |||||| |||||||  ||| ||| |||||| |||| |||| ||| ||| || |||||||||||| ||||||||||| |||||  |||||| | || ||||    
T  54159114 gcatttctttcttcatatttatgttttatcattttgtttgcagggaaagaagaaatatcttgtgctgagagagattcctgaagatggagttaaagggctg 54159015  T
Q  373 ctggccaccaaggagtctttggcctcatgtgacattgcagtttttgttcat 423  Q
    ||||| |  ||||||||||||||||| |||||||||||| || ||||||||    
T  54159014 ctggcgaataaggagtctttggcctcttgtgacattgcaattattgttcat 54158964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 423
Target Start/End: Original strand, 53868220 - 53868346
Alignment:
Q  297 tttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcacagagctgctggccaccaaggagtctttggcc 396  Q
    |||||| |||| |||| ||| |||||| |||||||||||| ||||||| ||| |||||  |||||| | |||||||||||| |  ||  |||||||||||    
T  53868220 tttatcattttgtttgcagggaaacaagaaatatcttgtgctgagagaaattcctgaagatggagttagagagctgctggcgaataataagtctttggcc 53868319  T
Q  397 tcatgtgacattgcagtttttgttcat 423  Q
    || |||||| |||||||||| ||||||    
T  53868320 tcttgtgacgttgcagttttcgttcat 53868346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 54159278 - 54159170
Alignment:
Q  75 atcttattgttgttgaaattcataatgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagg 174  Q
    ||||||||||||||||| |||||| ||||||||||||||  ||  |||||||||||||||  |||||| ||||||||| ||||| ||||||  ||||| |    
T  54159278 atcttattgttgttgaa-ttcatattgcaggccatattctgaaatttacaatccaaccaacgaggatcattatgctgtgaatgtggttgatgattctatg 54159180  T
Q  175 gtaattgata 184  Q
    |||| |||||    
T  54159179 gtaaatgata 54159170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 423
Target Start/End: Complemental strand, 51366025 - 51365876
Alignment:
Q  273 gcatttatttcttccaattcatgatttatcgttttatttgtaggaaaacaaaaaatatcttgtgttgagagagatttctgaatgtggagtcac-agagct 371  Q
    |||||| ||||||| | |||||| |||||| ||  | ||| ||| |||||| |||||||||||||||| |||||||  ||||  ||||||||  ||| ||    
T  51366025 gcatttctttcttcaagttcatgttttatcatt--agttgcagggaaacaagaaatatcttgtgttgaaagagattcatgaagatggagtcaagagaact 51365928  T
Q  372 gctggccaccaaggagtctttggcctcatgtgacattgcagtttttgttcat 423  Q
    |||||| |  ||||||||||||||||| |||||||||||  |||||||||||    
T  51365927 gctggctaataaggagtctttggcctcttgtgacattgccatttttgttcat 51365876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 53868035 - 53868141
Alignment:
Q  77 cttattgttgttgaaattcataatgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggt 176  Q
    |||||||||||| ||||||||||||||||||||||    ||  |||  ||||||| ||  |||||||||||| ||||||||||||||||| ||||| |||    
T  53868035 cttattgttgtt-aaattcataatgcaggccatatcttgaaatttatgatccaactaacgaggatcgttatgttgtaaatgttgttgataattctatggt 53868133  T
Q  177 aattgata 184  Q
    || |||||    
T  53868134 aaatgata 53868141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 51366189 - 51366131
Alignment:
Q  126 tccaaccaataaggatcgttatgctgtaaatgttgttgatatttctagggtaattgata 184  Q
    |||||||||  ||||||||||||||||||||||||||||| || ||| ||||| |||||    
T  51366189 tccaaccaacgaggatcgttatgctgtaaatgttgttgattttgctatggtaaatgata 51366131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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