View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10636_low_12 (Length: 248)
Name: NF10636_low_12
Description: NF10636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10636_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8139820 - 8139589
Alignment:
| Q |
1 |
ttcggaaatatcgaagttgctaaatcatattgaattttgtatcgtctactctaaaatccgacacggaagagcgatatagcgccgatataccggatattta |
100 |
Q |
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| T |
8139820 |
ttcggaaatatcgaagttgctaaatcatattgaattttgtatcgtctactctaaaatccgacacggaagagcgatatagcgccgatacaccggatattta |
8139721 |
T |
|
| Q |
101 |
acaacactgatattgatttgtttcagcaataaagagaaaaggacctcgttagtttaccaattattttccatgacactagatgtgactttccctgcccggc |
200 |
Q |
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| T |
8139720 |
ataacactgatattgatttgtttcagcaataaagagaaaaggacctcgttagtttaccaattattttccatgacactagatgtgactttccctgcccggc |
8139621 |
T |
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| Q |
201 |
acttgcttctgcacttgttcttgccatgatgt |
232 |
Q |
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| T |
8139620 |
acttgcttctgcacttgttcttgccatgatgt |
8139589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 7499018 - 7499106
Alignment:
| Q |
142 |
gacctcgttagtttaccaattattttccatgacactagatgtgactttccctgcccggcacttgcttctgcacttgttcttgccatgat |
230 |
Q |
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| T |
7499018 |
gacctctttagtttaccaatttttttccatgacattagatgccactttacccacccggaactttcttctgcacttgttcttgccatgat |
7499106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 7502081 - 7502172
Alignment:
| Q |
132 |
aagagaaaaggacctcgttagtttaccaattatttt-ccatgacactagatgtgactttccctgcccggcacttgcttctgcacttgttctt |
222 |
Q |
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| T |
7502081 |
aagaaaaagggaactctttagtttaccaattttttttccatgacactagacgtcactttccccgcctggtgcttgcttctgcacttgttctt |
7502172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 7501642 - 7501741
Alignment:
| Q |
5 |
gaaatatcgaagttgctaaatcatattgaattttgtatcgtctactctaaaatccgacacggaagagcgatatagcgccgatataccggatatttaacaa |
104 |
Q |
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|||||||| ||||||||||| ||| ||| |||| ||||||||||| ||||| ||||| |||| | || ||||| ||| ||||| |||||||||||||| |
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| T |
7501642 |
gaaatatcaaagttgctaaaccatgttggatttcgtatcgtctaccctaaattccgatacggtatggcagtatagtgccaatataacggatatttaacaa |
7501741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 9130191 - 9130084
Alignment:
| Q |
4 |
ggaaatatcgaagttgctaaatcatattgaattttgtatcgtctactctaaaatccgacacggaagagcgatatagcgccgatataccggatatttaaca |
103 |
Q |
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||||||| ||||||||||||||| ||| | |||||||||||||||| |||| ||||| |||||||||| |||||||| ||||| |||||||||||||| |
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| T |
9130191 |
ggaaataccgaagttgctaaatcgtatcggattttgtatcgtctaccctaacttccgatacggaagagcagtatagcgctgatatgccggatatttaaca |
9130092 |
T |
|
| Q |
104 |
acactgat |
111 |
Q |
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|||||||| |
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| T |
9130091 |
acactgat |
9130084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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