View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10636_low_19 (Length: 232)
Name: NF10636_low_19
Description: NF10636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10636_low_19 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 6351 - 6552
Alignment:
| Q |
17 |
aaaaatgacatttgagaaattaagttaccaattagcagttgataattgggattttgggaagcactttttcttgatttgaacttgagagaggaaccctttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6351 |
aaaaatgacatttgagaaattaagttaccaattagcagttgataattgggattttgggaagcactttttcttgatttgaacttgagagaggaaccctttc |
6450 |
T |
|
| Q |
117 |
atatggtattgcattatagacattgatttccaagtcctaaccaataacgaagcaaagcatggattttcatgaagaaactttataaaatcaaatagatctc |
216 |
Q |
| |
|
| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6451 |
acatggtattgcattttagacattgatttctaagtcctaaccaataacgaagcaaagcatggattttcatgaagaaactttataaaatcaaatagatctc |
6550 |
T |
|
| Q |
217 |
tg |
218 |
Q |
| |
|
|| |
|
|
| T |
6551 |
tg |
6552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 21351384 - 21351469
Alignment:
| Q |
18 |
aaaatgacatttgagaaattaagttaccaattagcagttgataattgggattttgggaagcactttttcttgatttgaacttgaga |
103 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21351384 |
aaaaggacatttgaaaaattatgttaccaattagcagttgataattgggattttgggaagcactttttcttgatttaaacttgaga |
21351469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 21351521 - 21351614
Alignment:
| Q |
124 |
attgcattatagacattgatttccaagtcctaaccaataacgaagcaaagcatggattttcatgaagaaactttataaaatcaaatagatctct |
217 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||| ||||||||||| |||| ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
21351521 |
attgcatttcagacattgatttccatgtcctaaccaataacaaagcaaagcatagattgtcatgaagagactttataaaaccaaatagatctct |
21351614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 21351464 - 21351500
Alignment:
| Q |
28 |
ttgagaaattaagttaccaattagcagttgataattg |
64 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21351464 |
ttgagaaattatgttaccaattagcagttgataattg |
21351500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University