View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10636_low_5 (Length: 332)

Name: NF10636_low_5
Description: NF10636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10636_low_5
NF10636_low_5
[»] chr8 (3 HSPs)
chr8 (200-317)||(37484843-37484960)
chr8 (49-173)||(37484732-37484843)
chr8 (252-317)||(8273722-8273787)
[»] chr4 (3 HSPs)
chr4 (134-316)||(44645660-44645842)
chr4 (248-317)||(20672243-20672312)
chr4 (240-292)||(4913475-4913527)
[»] chr2 (1 HSPs)
chr2 (261-317)||(13016996-13017052)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 37484843 - 37484960
Alignment:
Q  200 ccaataccaagataatgccttgatctcatccacaaccacctcaaaatgcttaatttgattattaaaaatcctagcattcatttccttccaaattgaccaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37484843 ccaataccaagataatgccttgatctcatccacaaccacctcaaaatgcttaatttgattattaaaaatcctagcattcctttccttccaaattgaccaa 37484942  T
Q  300 atcaccgcatgccaaatc 317  Q
    ||| || |||||||||||    
T  37484943 atcgccacatgccaaatc 37484960  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 49 - 173
Target Start/End: Original strand, 37484732 - 37484843
Alignment:
Q  49 cagctgaaagctcctatacagctgttctgctgcttgggaaactgcaaacagcacccatcagcgccacccatcagcgccttataatacactcctttggatt 148  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||    
T  37484732 cagctgaaagctcctatacagctgctccgctgcttgggaaactgcaaacagcacc-------------catcagcgccttataatacactcctttggatt 37484818  T
Q  149 ccatgtccactcgtaaaataaacac 173  Q
    |||||||||||||||||||||||||    
T  37484819 ccatgtccactcgtaaaataaacac 37484843  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 8273787 - 8273722
Alignment:
Q  252 atttgattattaaaaatcctagcattcatttccttccaaattgaccaaatcaccgcatgccaaatc 317  Q
    |||||||| ||||||||||| |||||  ||||||||||||| ||||||||   |||||||||||||    
T  8273787 atttgattgttaaaaatccttgcatttctttccttccaaatcgaccaaattgtcgcatgccaaatc 8273722  T

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Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 134 - 316
Target Start/End: Complemental strand, 44645842 - 44645660
Alignment:
Q  134 acactcctttggattccatgtccactcgtaaaataaacacgaaggcatttgtaatctactcatcgcccaataccaagataatgccttgatctcatccaca 233  Q
    |||||||||||||||| |||||||||||||||| |  ||||| || ||  ||||||| |||||||||||||||||||| |  ||||||||||||||||      
T  44645842 acactcctttggattcaatgtccactcgtaaaaaaggcacgagggtatccgtaatctgctcatcgcccaataccaagaaagcgccttgatctcatccagt 44645743  T
Q  234 accacctcaaaatgcttaatttgattattaaaaatcctagcattcatttccttccaaattgaccaaatcaccgcatgccaaat 316  Q
    ||| | ||||||||||||  |||||| |||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||    
T  44645742 acctcatcaaaatgcttagcttgatttttaaaaatcctagcattcctttctttccaaattgaccaaaccaccgcgtgccaaat 44645660  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 20672312 - 20672243
Alignment:
Q  248 cttaatttgattattaaaaatcctagcattcatttccttccaaattgaccaaatcaccgcatgccaaatc 317  Q
    |||| ||||||| ||||||||||| || ||  ||||| |||||||| ||||||||||||  |||||||||    
T  20672312 cttagtttgattcttaaaaatcctcgcgtttctttccctccaaattaaccaaatcaccgagtgccaaatc 20672243  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 4913475 - 4913527
Alignment:
Q  240 tcaaaatgcttaatttgattattaaaaatcctagcattcatttccttccaaat 292  Q
    |||||||||| || |||||| ||||||||||| |||||  |||||||||||||    
T  4913475 tcaaaatgctgaaattgattcttaaaaatcctcgcatttctttccttccaaat 4913527  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 13016996 - 13017052
Alignment:
Q  261 ttaaaaatcctagcattcatttccttccaaattgaccaaatcaccgcatgccaaatc 317  Q
    |||||||||||||||||  ||||| ||||||| ||||||||   |||||||||||||    
T  13016996 ttaaaaatcctagcatttctttccatccaaatcgaccaaattgtcgcatgccaaatc 13017052  T

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