View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10636_low_6 (Length: 279)
Name: NF10636_low_6
Description: NF10636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10636_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 39293917 - 39293645
Alignment:
| Q |
1 |
cccttactcatcgacagacaaaacatgttaagaaggattcattaacaagtaatgtacaaactcttacgtttaaataggaatcaaaataacacgtttaggc |
100 |
Q |
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| T |
39293917 |
cccttactcatcgacagacaaaacatgttaagaaggattcattaacaagtaatgtacaaactctaacgtttaaataggaatcaaaataacacgtttaggc |
39293818 |
T |
|
| Q |
101 |
agctatatatgactcagtc---agtcaaaagagaaatagatcgatataataaagatatgagtacgtataatccttcaattaaaaaatctaaacagaacat |
197 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39293817 |
agctatatatgactcagtcatgagtcaaaagagaaatagatcgatataataaagatatgagtacgtataatccttcaattaaaaaatctaaacagaacat |
39293718 |
T |
|
| Q |
198 |
gaaattttattagtaatccactaaatatttacgtctc-ctatgactctttctaacagcacaacaatttctctg |
269 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39293717 |
gaaattttattagtaatccactaaatatttacgtctcactatgactctttctaacagcacaacaatttctctg |
39293645 |
T |
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