View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10636_low_7 (Length: 260)

Name: NF10636_low_7
Description: NF10636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10636_low_7
NF10636_low_7
[»] chr5 (3 HSPs)
chr5 (24-250)||(15258946-15259173)
chr5 (134-236)||(32108474-32108576)
chr5 (179-234)||(35101384-35101439)
[»] chr1 (9 HSPs)
chr1 (137-228)||(46232337-46232428)
chr1 (110-243)||(28424465-28424600)
chr1 (122-227)||(30488172-30488277)
chr1 (141-242)||(41115972-41116073)
chr1 (138-217)||(33677689-33677768)
chr1 (193-250)||(34167111-34167168)
chr1 (132-214)||(11077506-11077588)
chr1 (121-158)||(8155274-8155311)
chr1 (138-211)||(39297333-39297406)
[»] chr7 (3 HSPs)
chr7 (138-244)||(21636234-21636340)
chr7 (122-222)||(6561119-6561219)
chr7 (134-234)||(41126110-41126210)
[»] chr4 (5 HSPs)
chr4 (116-217)||(26698102-26698203)
chr4 (116-185)||(53146971-53147040)
chr4 (138-173)||(23636629-23636664)
chr4 (138-216)||(20401601-20401679)
chr4 (192-245)||(30212967-30213020)
[»] chr2 (8 HSPs)
chr2 (140-232)||(2454429-2454521)
chr2 (115-250)||(9145596-9145731)
chr2 (116-217)||(26159642-26159743)
chr2 (138-193)||(15672290-15672345)
chr2 (199-234)||(23480913-23480948)
chr2 (122-225)||(23847891-23847994)
chr2 (138-193)||(34514362-34514417)
chr2 (137-223)||(40704166-40704252)
[»] chr8 (6 HSPs)
chr8 (135-218)||(30541913-30541996)
chr8 (117-217)||(27529558-27529658)
chr8 (138-234)||(42689348-42689444)
chr8 (116-214)||(32475578-32475676)
chr8 (132-193)||(24052534-24052595)
chr8 (134-227)||(30998523-30998616)
[»] chr6 (2 HSPs)
chr6 (138-193)||(12250952-12251007)
chr6 (107-168)||(13649209-13649268)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 15258946 - 15259173
Alignment:
Q  24 ctacaaaagtctatgaggaagaaaaaacagttacatcaatagtcttggtaacatagagcnnnnnnn-ggcaaaatacaagatcgctaaatagcaactctc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| |||||||    
T  15258946 ctacaaaagtctatgaggaagaaaaaacagttacatcaatagtcttggtaacatagagcaaaaaaaaggcaaaatacaagatcgctaaatagtaactctc 15259045  T
Q  123 aaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15259046 aaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaa 15259145  T
Q  223 gaagatgttgaatagaatcccccctttg 250  Q
    ||||||||||||||||||||||| ||||    
T  15259146 gaagatgttgaatagaatcccccttttg 15259173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 32108576 - 32108474
Alignment:
Q  134 agggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttga 233  Q
    |||||||| ||| || ||||||||| | ||||||||||||   |||||||||||||| ||||| |||||||| ||||||| |||||||||||| || |||    
T  32108576 agggttaaaccatcatatatgatagctaaaagcaaaattagagtgatttgctttcaaacatcagaaagattggagcttaactttctcaagaaggtgatga 32108477  T
Q  234 ata 236  Q
    |||    
T  32108476 ata 32108474  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 35101384 - 35101439
Alignment:
Q  179 atttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaa 234  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  35101384 atttgctttcaaccatcaataagattgaagcttaattttgtcaagaagatgttgaa 35101439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 46232337 - 46232428
Alignment:
Q  137 gttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagat 228  Q
    |||||| || |||||||||||||||||||||||||||  |||||| |  |||||||| || ||||||||||||||||||||||||| |||||    
T  46232337 gttaagtcatcacatatgatagttgaaagcaaaattagaatgattcgtcttcaaccaccataaagattgaagcttaattttctcaaaaagat 46232428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 243
Target Start/End: Original strand, 28424465 - 28424600
Alignment:
Q  110 aatagcaactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagc 209  Q
    ||||| ||||| || |||||| | ||| ||||| || |||||||||||||| ||||||||||||  ||||||| | ||||||||  | |||| | | | |    
T  28424465 aatagtaactcccacacacaaaataggcttaagtcatcacatatgatagttaaaagcaaaattatgatgattttccttcaaccactaaaaaggtcggatc 28424564  T
Q  210 ttaattttctcaagaag--atgttgaatagaatccc 243  Q
    |||||||||||||||||  |||||||||||||||||    
T  28424565 ttaattttctcaagaagatatgttgaatagaatccc 28424600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 30488277 - 30488172
Alignment:
Q  122 caaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctca 221  Q
    |||| |||| ||||| || ||||||||||||||| |||||||||||||||||| |||||| || ||||| |   | |||||||| |||||| |||| ||     
T  30488277 caaatacaaaagaggattgagccaccacatatgaaagttgaaagcaaaattaacatgattcgccttcaatctcaaaaaagattggagcttatttttttct 30488178  T
Q  222 agaaga 227  Q
    ||||||    
T  30488177 agaaga 30488172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Original strand, 41115972 - 41116073
Alignment:
Q  141 agccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaatagaat 240  Q
    |||| ||||||||||||  |||||||||||||||||||||   |||||| |||| | |||||||||||||| |||||  || |||||| || ||||| ||    
T  41115972 agcccccacatatgataagtgaaagcaaaattaatatgatcctctttcagccattaaaaagattgaagctttatttttccatgaagatattaaatagtat 41116071  T
Q  241 cc 242  Q
    ||    
T  41116072 cc 41116073  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 217
Target Start/End: Complemental strand, 33677768 - 33677689
Alignment:
Q  138 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaatttt 217  Q
    |||||||| ||||| ||||| || ||||||||||||| ||||||||  ||||||||| | || ||||| |||||||||||    
T  33677768 ttaagccaacacatgtgataattaaaagcaaaattaagatgatttgtcttcaaccattagaaggattggagcttaatttt 33677689  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 34167168 - 34167111
Alignment:
Q  193 atcacaaagattgaagcttaattttctcaagaagatgttgaatagaatcccccctttg 250  Q
    |||| ||| ||||||||||||||||||||| | ||||||||| |||||||||| ||||    
T  34167168 atcagaaaaattgaagcttaattttctcaaaatgatgttgaagagaatcccccttttg 34167111  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 11077588 - 11077506
Alignment:
Q  132 agagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaat 214  Q
    ||||| ||||||||||| || || | ||| ||||||||||| | ||||||||| ||||||||| | ||||| | |||||||||    
T  11077588 agaggattaagccaccaaatgtggtggttaaaagcaaaattgacatgatttgccttcaaccataaaaaagaatcaagcttaat 11077506  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 8155274 - 8155311
Alignment:
Q  121 tcaaacacaatagagggttaagccaccacatatgatag 158  Q
    |||||||||||||||||| || ||||||||||||||||    
T  8155274 tcaaacacaatagagggtcaaaccaccacatatgatag 8155311  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 39297333 - 39297406
Alignment:
Q  138 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagctt 211  Q
    |||||||||||||||||||| |  ||||||||| |||| |  |||||||||||||| || |||||  |||||||    
T  39297333 ttaagccaccacatatgataatcaaaagcaaaagtaatttagtttgctttcaaccaccaaaaagagagaagctt 39297406  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 21636234 - 21636340
Alignment:
Q  138 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaatag 237  Q
    |||||| |||||||||| ||||| |||||||||||||  ||||||||||| ||||| ||||| ||||||||||||| ||| || |||||| |||||| ||    
T  21636234 ttaagctaccacatatggtagttaaaagcaaaattaaggtgatttgcttttaaccaccacaaggattgaagcttaaatttatctagaagaagttgaaaag 21636333  T
Q  238 aatcccc 244  Q
     ||||||    
T  21636334 gatcccc 21636340  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 6561119 - 6561219
Alignment:
Q  122 caaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctca 221  Q
    |||||| || ||||| |||||||||||||||||||| || |||| |||||||| ||||||||| |||||||| || || ||||| ||||||| ||| |||    
T  6561119 caaacataaaagaggattaagccaccacatatgataattaaaagaaaaattaaaatgatttgccttcaaccaccagaaggattggagcttaactttttca 6561218  T
Q  222 a 222  Q
    |    
T  6561219 a 6561219  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 41126110 - 41126210
Alignment:
Q  134 agggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttga 233  Q
    |||||||||||||||| | |||||||| |||||||||||   ||||||||| || | |||| |  ||||||| ||||| ||||||||| |||||||||||    
T  41126110 agggttaagccaccacgtgtgatagttaaaagcaaaatttggatgatttgcctttagccataagtaagattgtagctttattttctcatgaagatgttga 41126209  T
Q  234 a 234  Q
    |    
T  41126210 a 41126210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 26698203 - 26698102
Alignment:
Q  116 aactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaatt 215  Q
    ||||| |||||| || ||||| |||||||||||||| ||||| || ||||||||||||  ||||||||  |||||||| || || |||||||||||||||    
T  26698203 aactcccaaacataaaagaggattaagccaccacatgtgataattaaaagcaaaattaggatgatttggcttcaaccaccagaaggattgaagcttaatt 26698104  T
Q  216 tt 217  Q
    ||    
T  26698103 tt 26698102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 53146971 - 53147040
Alignment:
Q  116 aactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgct 185  Q
    ||||| |||||| || ||||| ||||||||||||||||| || || ||||||||||||  ||||||||||    
T  53146971 aactcccaaacataaaagaggattaagccaccacatatggtaattaaaagcaaaattatgatgatttgct 53147040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 173
Target Start/End: Complemental strand, 23636664 - 23636629
Alignment:
Q  138 ttaagccaccacatatgatagttgaaagcaaaatta 173  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23636664 ttaagccaccacatatgatagttaaaagcaaaatta 23636629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 20401679 - 20401601
Alignment:
Q  138 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattt 216  Q
    ||||||||||||| ||||||   ||||| |||||||  |||||| ||||||||||| ||  |||||| |||||||||||    
T  20401679 ttaagccaccacaaatgataagagaaagtaaaattaggatgattcgctttcaaccaccaataagattaaagcttaattt 20401601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 30213020 - 30212967
Alignment:
Q  192 catcacaaagattgaagcttaattttctcaagaagatgttgaatagaatccccc 245  Q
    ||||| || ||||| ||||| |||||||||||||||||||| | ||||||||||    
T  30213020 catcaaaaggattggagcttgattttctcaagaagatgttgcaaagaatccccc 30212967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 2454521 - 2454429
Alignment:
Q  140 aagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttg 232  Q
    ||||||||| | ||||||||| |||||||||||||| || || ||||||||||||||  ||||||| || |||||||| || ||||| |||||    
T  2454521 aagccaccatagatgatagttaaaagcaaaattaatgtgtttcgctttcaaccatcagtaagattgtagtttaattttatcgagaagttgttg 2454429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 9145731 - 9145596
Alignment:
Q  115 caactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaat 214  Q
    |||||| |||||| || ||||| |||||||||||  | || || || ||||||||||||   |||||||| |||||||| || |||||||| ||||||||    
T  9145731 caactcccaaacataaaagaggattaagccaccatttgtgctaattaaaagcaaaattagggtgatttgccttcaaccaccaaaaagattggagcttaat 9145632  T
Q  215 tttctcaagaagatgttgaatagaatcccccctttg 250  Q
    ||| || ||||| || | |||||||| |||| ||||    
T  9145631 tttatctagaagctgattaatagaattccccgtttg 9145596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 26159642 - 26159743
Alignment:
Q  116 aactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaatt 215  Q
    |||||||||||| || ||||| |||||||||||||| |||||  | ||||||||||||  ||||||||  |||| |||  | || |||||||||||||||    
T  26159642 aactctcaaacataaaagaggattaagccaccacatgtgataactaaaagcaaaattaggatgatttgtcttcagccactagaaggattgaagcttaatt 26159741  T
Q  216 tt 217  Q
    ||    
T  26159742 tt 26159743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 15672345 - 15672290
Alignment:
Q  138 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaacca 193  Q
    |||||||||||||||||||| | ||||||||||||| | |||||| ||||||||||    
T  15672345 ttaagccaccacatatgataatcgaaagcaaaattagtgtgatttactttcaacca 15672290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 23480948 - 23480913
Alignment:
Q  199 aagattgaagcttaattttctcaagaagatgttgaa 234  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23480948 aagattgaagcttaattttgtcaagaagatgttgaa 23480913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 23847994 - 23847891
Alignment:
Q  122 caaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctca 221  Q
    |||||| || ||||| || |||||||||||||| ||||| ||||||||||| || || || ||| |||||||||   | ||||| | ||||||||| |||    
T  23847994 caaacataaaagaggatttagccaccacatatggtagttaaaagcaaaattgatgtgtttcgctctcaaccatccataggattgcatcttaattttgtca 23847895  T
Q  222 agaa 225  Q
    ||||    
T  23847894 agaa 23847891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 34514362 - 34514417
Alignment:
Q  138 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaacca 193  Q
    ||||||||||||||||||||||| ||||||||||| |  |||||||  ||||||||    
T  34514362 ttaagccaccacatatgatagttaaaagcaaaattgacgtgatttgtcttcaacca 34514417  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 40704252 - 40704166
Alignment:
Q  137 gttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaag 223  Q
    |||||||||||||| ||||||    |||||||||||   | |||||||||| ||||||||  ||||||| ||||||||||| |||||    
T  40704252 gttaagccaccacaaatgataagaaaaagcaaaatttggacgatttgcttttaaccatcaataagattgcagcttaattttatcaag 40704166  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 30541996 - 30541913
Alignment:
Q  135 gggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttc 218  Q
    ||||||||||||| ||||||||| || ||||||||||||  |||||||| |||||||||  | || ||||| ||||||||||||    
T  30541996 gggttaagccaccgcatatgataattaaaagcaaaattaggatgatttgttttcaaccacaagaaggattggagcttaattttc 30541913  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 27529658 - 27529558
Alignment:
Q  117 actctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattt 216  Q
    |||||||||||  | ||||| |||| |||| | | ||||||||  ||||||||||| || ||||||||||||| ||| ||| | ||||||| ||||||||    
T  27529658 actctcaaacaagagagaggattaaaccactataaatgatagtcaaaagcaaaattgatctgatttgctttcagccaccactatgattgaaacttaattt 27529559  T
Q  217 t 217  Q
    |    
T  27529558 t 27529558  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 42689444 - 42689348
Alignment:
Q  138 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaagatgttgaa 234  Q
    |||||||||||||  |||||| | ||| |||||||||| | |||  ||||||  ||| |  ||||||||||||||||||| |||||||| |||||||    
T  42689444 ttaagccaccacaagtgataggtaaaaacaaaattaattttattcactttcagtcattagtaagattgaagcttaattttgtcaagaagttgttgaa 42689348  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 32475578 - 32475676
Alignment:
Q  116 aactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaat 214  Q
    ||||| |||||| || || || || ||||||||||||||||| |||||||| ||||||  ||||||||  |||||||| ||  | ||||||| ||||||    
T  32475578 aactcccaaacaaaagaggggattgagccaccacatatgataattgaaagcgaaattaggatgatttgtcttcaaccaccaatatgattgaaacttaat 32475676  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 24052595 - 24052534
Alignment:
Q  132 agagggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaacca 193  Q
    ||||| ||||||||||||||||| || |||||| ||||| ||  ||||||||| ||||||||    
T  24052595 agaggattaagccaccacatatggtaattgaaaacaaaagtataatgatttgccttcaacca 24052534  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 30998523 - 30998616
Alignment:
Q  134 agggttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaaccatcacaaagattgaagcttaattttctcaagaaga 227  Q
    |||||||||| ||||||| |||||  | |||||||||||||   |||| |||||||  |||||  | ||||||| ||||||||| |||||||||    
T  30998523 agggttaagctaccacatgtgataagtaaaagcaaaattaagccgattcgctttcagacatcaatatgattgaaacttaattttgtcaagaaga 30998616  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 12251007 - 12250952
Alignment:
Q  138 ttaagccaccacatatgatagttgaaagcaaaattaatatgatttgctttcaacca 193  Q
    |||||||||||||| ||||| || ||||||||||||  ||||||||||||||||||    
T  12251007 ttaagccaccacatgtgataattaaaagcaaaattatgatgatttgctttcaacca 12250952  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 13649209 - 13649268
Alignment:
Q  107 ctaaatagcaactctcaaacacaatagagggttaagccaccacatatgatagttgaaagcaa 168  Q
    ||||||| |||||| |||||||||  |||  |||| ||||||||||||||||||||||||||    
T  13649209 ctaaataacaactcccaaacacaa--gagtattaaaccaccacatatgatagttgaaagcaa 13649268  T

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