View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_1 (Length: 470)
Name: NF10637_low_1
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Complemental strand, 5523050 - 5522615
Alignment:
| Q |
19 |
atataacacatcacttgagtcttatcaatctcagctctagatccatattttctgaagggaagtttcttcttgagttgatatttcattttctacgttcttt |
118 |
Q |
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| T |
5523050 |
atataacacatcacttgagtcttatcaatctcagctctagatccatattttctgaagggaagtttcttcttgagttgatatttcattttctacgttcttt |
5522951 |
T |
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| Q |
119 |
gaattttccttgatataagtgttagctcatctctagcttattcttcgcaaagttattgatctttcggattctccacgagttcaaaattatcgaccacatc |
218 |
Q |
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| T |
5522950 |
gaattttcct----ataagtgttagctcatctctagcttattcttcgcaaagttattgatctttcggattctccacgagttcaaaattatcgaccacatc |
5522855 |
T |
|
| Q |
219 |
aaggtgactctcaaaagctttaaaggaaatcatttttcctttcctaattggtttgtcttcactgagtagaacttcatgagtggtaatcctatcaacattt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
5522854 |
aaggtgactctcaaaagctttaaaggaaatcatttttcctttcctaattggtttgtcttcactgagtagaacttcatgagttgtaatcctatgaacattt |
5522755 |
T |
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| Q |
319 |
tctattacaaggtttcaatttttagcatggtgattgaaatcatacctttctccatcattggtttctcctgagtttcactgagtacttttaatggaagatc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5522754 |
tctattacaaggtttcaatttttagcatggtgattgaaatcatacctttctccatcattggtttctcctgagtttcactgagtacttttaatggaagatc |
5522655 |
T |
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| Q |
419 |
ttcatctttctccggttgtttctttctatgatcttcatct |
458 |
Q |
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| T |
5522654 |
ttcatctttctccggttgtttctttctatgatcttcatct |
5522615 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 18834155 - 18834207
Alignment:
| Q |
246 |
aatcatttttcctttcctaattggtttgtcttcactgagtagaacttcatgag |
298 |
Q |
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|||||| || |||||| | ||||||||||||||| |||| ||||||||||||| |
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| T |
18834155 |
aatcatcttgcctttcatgattggtttgtcttcaatgagcagaacttcatgag |
18834207 |
T |
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