View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_10 (Length: 306)
Name: NF10637_low_10
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 2708663 - 2708531
Alignment:
| Q |
22 |
atgaggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggtatatattctgttgattgtgtgaacagacaatagttaat |
121 |
Q |
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| T |
2708663 |
atgaggttgggtttgtctggtagcctatcaatatacaagttgaagcatagtgcagacaaggtatatattctgttgattgtgtgaacagacaatagttaat |
2708564 |
T |
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| Q |
122 |
gtttagcactaatgcaaatgtttgtatattgtt |
154 |
Q |
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| T |
2708563 |
gttaagcactaatgcaaatgtttgtatattgtt |
2708531 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 2702724 - 2702663
Alignment:
| Q |
22 |
atgaggttgggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggt |
83 |
Q |
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||||| ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |
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| T |
2702724 |
atgagcttgggtttgtctcatagcctatcaagatacaagttgaagttcagtgcagacaaggt |
2702663 |
T |
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