View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10637_low_11 (Length: 298)

Name: NF10637_low_11
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10637_low_11
NF10637_low_11
[»] chr7 (25 HSPs)
chr7 (18-267)||(8545964-8546213)
chr7 (18-283)||(8582016-8582281)
chr7 (18-283)||(8576642-8576907)
chr7 (18-283)||(8570627-8570892)
chr7 (18-283)||(8559649-8559914)
chr7 (23-283)||(8538352-8538612)
chr7 (18-263)||(29577256-29577501)
chr7 (22-283)||(7877324-7877585)
chr7 (22-263)||(8635934-8636175)
chr7 (18-263)||(29581428-29581673)
chr7 (18-263)||(8585293-8585538)
chr7 (18-263)||(8602310-8602555)
chr7 (67-263)||(8590974-8591170)
chr7 (133-263)||(8610253-8610383)
chr7 (18-263)||(8667755-8668000)
chr7 (18-205)||(8654844-8655031)
chr7 (18-251)||(10493961-10494194)
chr7 (126-263)||(13333151-13333288)
chr7 (18-261)||(3147610-3147853)
chr7 (66-262)||(8647214-8647407)
chr7 (66-201)||(8640184-8640316)
chr7 (18-263)||(8671217-8671462)
chr7 (182-279)||(27830626-27830723)
chr7 (19-201)||(1301862-1302044)
chr7 (22-263)||(8382467-8382708)
[»] chr8 (2 HSPs)
chr8 (18-263)||(12528840-12529085)
chr8 (66-262)||(43745184-43745380)
[»] chr4 (4 HSPs)
chr4 (18-280)||(35132767-35133027)
chr4 (65-263)||(9335525-9335723)
chr4 (27-87)||(9337586-9337646)
chr4 (188-280)||(30775571-30775663)
[»] chr2 (6 HSPs)
chr2 (18-263)||(16661579-16661824)
chr2 (19-263)||(12244994-12245238)
chr2 (182-280)||(12258332-12258430)
chr2 (182-280)||(14703727-14703825)
chr2 (150-263)||(16657236-16657349)
chr2 (150-280)||(7542545-7542675)
[»] chr5 (2 HSPs)
chr5 (18-262)||(28220288-28220532)
chr5 (154-242)||(42555667-42555755)
[»] chr1 (2 HSPs)
chr1 (150-263)||(34466512-34466625)
chr1 (47-280)||(15595360-15595588)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 8546213 - 8545964
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546213 gttaattggaaggaaatatagtgattcctttgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 8546114  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546113 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 8546014  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaa 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546013 ctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaa 8545964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 8582281 - 8582016
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    |||||||||||||||||||||||||||||||||||| || ||| |   |||||||||||| |||||||   | |||| ||||||||||||||||||  ||    
T  8582281 gttaattggaaggaaatatagtgattccattgttcaaaaggatatcaagttgtggcccttcaaggtcaccgcaggtgctaatgacaaaccgacaatcgtt 8582182  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||||||||| || ||  |||||||||||||||||||||||||||||||||||||||    
T  8582181 gtgaactacaagggtaaggaaaaacactttcttgctgaagaaatatcatctgttattctgacacagatgcgagagattgcagaggcatttttggagtcac 8582082  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccactaaag 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8582081 ctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaacgaagagccactaaag 8582016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 8576907 - 8576642
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||   || ||||||||||||||||||||| |||||  ||||||||||||||||||  ||    
T  8576907 gttaattggaaggaaatatagtgattccattgttcagaaggattgtcttttgtggccctttaaggtcattgccggtactaatgacaaaccgacaatcgtt 8576808  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| || || |||    
T  8576807 gtgaactacaaaggtgaggaaaaacgctttgttgctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaggcttttctgcagacac 8576708  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccactaaag 283  Q
    |||||||||||||||||||| |||| |||||||||||||||||||| ||| |||||||||||||||    
T  8576707 ctgttaagaatgcagtgatttctgtgcctgcttattttaatgattcccaacgaagagccactaaag 8576642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 8570892 - 8570627
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||||||||| |||||||||||||| |||||||  |||| ||| |||||||||||||||||||| ||||||| |||  ||||||| |||||  ||    
T  8570892 gttaattggaaggaagtatagtgattccatcgttcagatggatcgacttttgtggccctttaaggtcatctccggtgctaacaacaaaccaacaatcatt 8570793  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    ||||| |||| |||| ||||||| |  ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| |    
T  8570792 gtgaagtacatgggtaaggaaaaacgttttgtagctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaagcatttttggagtctc 8570693  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccactaaag 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8570692 ctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaacgaagagccactaaag 8570627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 8559914 - 8559649
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    |||||||||||||||||| ||||||||||| || || | |||| |||||||||||||||||||||||||  | || | |||||||||||| ||  | |||    
T  8559914 gttaattggaaggaaatacagtgattccatagtccaaagtgatgtactgttgtggccctttaaggtcatcgctggcgataatgacaaaccaacggtcctt 8559815  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    ||||| |||| |||  ||||||||||  ||||||| |||||||||||| || |||| ||| |||||||||||||||||||||| ||||||||||||||      
T  8559814 gtgaaatacaggggcaaggaaaagcatcttgttgccgaagaaatatcagctatgattctcacacagatgcgagagattgcagaagcatttttggagtcga 8559715  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccactaaag 283  Q
    | ||| ||||||| |||||||| ||||||||||||||||||||||| ||| |||||||||| ||||    
T  8559714 cggttgagaatgctgtgattaccgtacctgcttattttaatgattctcaaagaagagccaccaaag 8559649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 283
Target Start/End: Complemental strand, 8538612 - 8538352
Alignment:
Q  23 ttggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaa 122  Q
    ||||||| ||||||||||||||  || ||||||||||| |||||||||||||||| ||||| | | | | || |||||| ||||| |  ||| | ||||     
T  8538612 ttggaagaaaatatagtgattctgttattcagaatgatttactgttgtggcccttcaaggtaaatgctgatgctaatgataaacccatgattgtcgtgac 8538513  T
Q  123 ctacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgtt 222  Q
     |  ||||| || || || |||||| ||||||||||||||||| || || ||||| || ||||||| ||| | || || | ||||||||||||||||||     
T  8538512 gtgtaagggggaagagaaacacttttttgctgaagaaatatcagctatggtcctcacaaagatgcgggagttcgctgaagtatttttggagtcacctgtc 8538413  T
Q  223 aagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccactaaag 283  Q
    || |||||||||||||| |||||||||||||| |||||||||||  |||||||||| ||||    
T  8538412 aaaaatgcagtgattacagtacctgcttatttcaatgattcacagcgaagagccaccaaag 8538352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 29577256 - 29577501
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    |||||||||||||||||  |||||||||||| ||| ||| ||| ||  |||||||||||||||||||||| | || | | ||||||| || |  || |||    
T  29577256 gttaattggaaggaaattcagtgattccattattcggaaagatataaagttgtggccctttaaggtcattcctggagctgatgacaatcccaagatcctt 29577355  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    || || ||||||||  | || |||  |||||||||||| |||||||| ||| ||||||||||| ||||||  ||||||||||||  ||||||||||| ||    
T  29577356 gttaagtacaagggcaaagagaagtgctttgttgctgaggaaatatcgtctatgatcctctcaaagatgcaggagattgcagagaaatttttggagttac 29577455  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
    | || |||||||||||||| || || || |||||||| ||||||||    
T  29577456 ccgtaaagaatgcagtgatcacagtgccagcttatttcaatgattc 29577501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 283
Target Start/End: Original strand, 7877324 - 7877585
Alignment:
Q  22 attggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtga 121  Q
    ||||||||||||||||| |||||  || ||||||||||| | ||||||||||| ||||||||  || | |||  | ||||||| ||    ||  |||| |    
T  7877324 attggaaggaaatatagcgattctgttattcagaatgatattctgttgtggccatttaaggttgttgctggttctgatgacaagcctgatatcattgtta 7877423  T
Q  122 actacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgt 221  Q
    | || ||||| |||||||||||||||  ||| || |||||||||||  |||||||  || ||||||| ||||||||||||   |||||||||||||||||    
T  7877424 agtataagggcgaggaaaagcacttttgtgccgaggaaatatcatccatgatccttacaaagatgcgcgagattgcagagaagtttttggagtcacctgt 7877523  T
Q  222 taagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccactaaag 283  Q
     |||||||||||  ||||||| || |||||||| |||||||| ||| ||| |||||| ||||    
T  7877524 caagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaag 7877585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 8635934 - 8636175
Alignment:
Q  22 attggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtga 121  Q
    ||||||||||| ||||||||| | ||  ||||||||||||||    |||||||||||||||| ||| | |||  | |||||||||| |  ||| ||||||    
T  8635934 attggaaggaattatagtgatccaataattcagaatgatctaaatatgtggccctttaaggtaattgctggtcgtgatgacaaacccatgattgttgtga 8636033  T
Q  122 actacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgt 221  Q
    | |||||||||||  |||||||  || || |||| |||||||| ||| || ||||  || |||||||||||||||| ||||||| | |||| ||| ||||    
T  8636034 aatacaagggtgaacaaaagcaactttttcctgaggaaatatcgtctatggtcctgacaaagatgcgagagattgctgaggcatatctggaatcatctgt 8636133  T
Q  222 taagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
     ||||||||||| |||||||| || |||||||| ||||||||    
T  8636134 caagaatgcagtcattactgtgcccgcttatttcaatgattc 8636175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 29581428 - 29581673
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    |||||| ||||| |||||||||||||| ||| ||||| ||||| ||   |||||||||||||||||  || | ||   | ||||||| || |  || |||    
T  29581428 gttaatcggaagaaaatatagtgattctattattcaggatgatataaatttgtggccctttaaggtagttgctggcactgatgacaatcccatgatcctt 29581527  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    || || ||||||||||| || |||   ||||||||||| |||||||||||| ||||||||||| ||||||  || |||||||||  ||||||||| |  |    
T  29581528 gttaagtacaagggtgaagagaagaggtttgttgctgaggaaatatcatctatgatcctctcaaagatgcatgatattgcagagaaatttttggaattgc 29581627  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
    |||| ||||||||||||||||| || ||||||||||| ||||||||    
T  29581628 ctgtaaagaatgcagtgattaccgtgcctgcttatttcaatgattc 29581673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 8585293 - 8585538
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||| ||||| | ||||||| || ||||||| |||||| || |||||||||| || ||||| || || ||||||||||||||||| |  |||  |    
T  8585293 gttaattggtaggaagtttagtgatcccgttgttcaaaatgatataatgttgtggccattcaaggttatctctggtgttaatgacaaacctatgattact 8585392  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    || || ||||||||| | |||||| || |   |||||| |||||||||||| | |||||| || | |||    ||||||||||| ||| |||| | ||||    
T  8585393 gttaagtacaagggtcaagaaaagaacctatgtgctgaggaaatatcatctatcatcctcacaaacatgaagaagattgcagagacatatttgaaatcac 8585492  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
    ||||| | ||||||||  | ||||| ||||||||||| ||||||||    
T  8585493 ctgttcaaaatgcagttgtgactgtgcctgcttatttcaatgattc 8585538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 8602555 - 8602310
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    |||||||||||||||||||||||||||  |  ||||||||||  ||| ||||||||| ||||||||  || | ||   | ||||||||||    ||  ||    
T  8602555 gttaattggaaggaaatatagtgattctgtcattcagaatgacatacggttgtggccatttaaggttgttcctggcaatgatgacaaacctgagatcatt 8602456  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    || || || ||||||| ||||||||||||   |||||| ||||| |||||  || ||||  || ||||||| || |||||||||   ||| |||||||||    
T  8602455 gttaagtataagggtggggaaaagcacttctgtgctgaggaaatctcatcaatggtccttacaaagatgcgtgaaattgcagagaagtttctggagtcac 8602356  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
    |||| |||||||||||  ||||||| || |||||||||||||||||    
T  8602355 ctgtcaagaatgcagttgttactgtgccggcttattttaatgattc 8602310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 263
Target Start/End: Complemental strand, 8591170 - 8590974
Alignment:
Q  67 ttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagca-ctttgttgctgaagaaatatca 165  Q
    |||||||| ||||||||  |||||||| || ||||||| ||   |||  |||| || |||||||||||||||||||  |||||| || || ||||| |||    
T  8591170 ttgtggccatttaaggttgtttccggttttgatgacaagcctgaaatcattgttaagtacaagggtgaggaaaagcgtctttgt-gcggaggaaatctca 8591072  T
Q  166 tctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
    ||  || | ||| || |||||||||||||||| ||    ||||||||||||||||| |||||||||||  ||||||| || |||||||||||||||||    
T  8591071 tccatggttctcacaaagatgcgagagattgctgaaaagtttttggagtcacctgtcaagaatgcagttgttactgtgccagcttattttaatgattc 8590974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 8610383 - 8610253
Alignment:
Q  133 gaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcag 232  Q
    |||||||||||||||||||| || ||||| |||||| |||||||  || | |||  |||||| || |||  |||||||||||||   |||||  ||||||    
T  8610383 gaggaaaagcactttgttgcggaggaaatttcatctatgatccttgcaaaaatgaaagagatagccgagaaatttttggagtcaaaggttaaagatgcag 8610284  T
Q  233 tgattactgtacctgcttattttaatgattc 263  Q
    |||| ||||| ||||||||||||||||||||    
T  8610283 tgatcactgtgcctgcttattttaatgattc 8610253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 8668000 - 8667755
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||| ||||| | ||||||  || ||||||| |  ||| || |||||||||| || ||||| ||||| ||||||||||||||||| |  |||  |    
T  8668000 gttaattggtaggaagtttagtgaccccgttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattact 8667901  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    || || ||||||||| | || |||||||||  |||||| |||||||| ||| || | ||  || ||||||||||| |||| ||||||| | ||| ||| |    
T  8667900 gttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatcttctatggtgcttacaaagatgcgagaggttgcggaggcatatctggggtcgc 8667801  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
    | || |||||||| ||  ||||||| || ||||| || ||||||||    
T  8667800 cggtcaagaatgccgttgttactgtgccagcttacttcaatgattc 8667755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 8655031 - 8654844
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||| ||||| ||||||||| | |||||||| || ||| |  |||||||||| || | ||| | ||| ||||||||||||||||| |  |||  |    
T  8655031 gttaattggtaggaagtatagtgatcctattgttcaaaaggatatcatgttgtggccattcatggttacttctggtgttaatgacaaacccatgattact 8654932  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcat 205  Q
    || || ||||| ||| | || ||||| |||  |||||| ||||||||||||| | | ||  || ||||||||||||||||||||||||    
T  8654931 gttaagtacaaaggtcaagagaagcaattttgtgctgaggaaatatcatctgcggttcttacaaagatgcgagagattgcagaggcat 8654844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 10493961 - 10494194
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||| ||||| | ||||||| |  ||||||| || ||| || |||||||||| || ||||| | ||| ||||| ||||||||||| |  |||       
T  10493961 gttaattggcaggaagtttagtgatccggttgttcaaaacgatataatgttgtggccattcaaggttacttcaggtgtcaatgacaaacctatgattacc 10494060  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    |  || ||||||||| | || |||||||||  ||| || |||||||||||| || ||||   | ||||||||||| |||||||||||| ||||| |||||    
T  10494061 gctaagtacaagggtcaagagaagcacttttgtgccgaggaaatatcatctatggtccttataaagatgcgagaggttgcagaggcatatttggggtcac 10494160  T
Q  218 ctgttaagaatgcagtgattactgtacctgctta 251  Q
    | || |||||||| ||  ||||||| || |||||    
T  10494161 cagtcaagaatgctgttgttactgtgccggctta 10494194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 13333151 - 13333288
Alignment:
Q  126 caagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaag 225  Q
    ||||||| | || |||||||||  ||| || |||||||||||| || ||||  || ||||||||||| |||||||||||| | ||| |||||| || |||    
T  13333151 caagggtcaagagaagcacttttgtgccgaggaaatatcatctatggtccttacaaagatgcgagaggttgcagaggcatatatggggtcaccagtcaag 13333250  T
Q  226 aatgcagtgattactgtacctgcttattttaatgattc 263  Q
    ||||| ||  ||||||| || ||||| || ||||||||    
T  13333251 aatgccgttgttactgtgccggcttacttcaatgattc 13333288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 3147853 - 3147610
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||| ||||| | | |||||||  ||||||| |||||| |  |||||||||| || |||||||||| ||| || ||||||||||| |  |||       
T  3147853 gttaattggtaggaagtttggtgattctgttgttcaaaatgatatgatgttgtggccattcaaggtcatttgcggagtgaatgacaaacccatgatttcg 3147754  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    || || | ||||||  |||| |||||| |   |||||||||||| |||||| || | ||  || |||||||  ||| ||||||||  ||||| || |  |    
T  3147753 gttaagtgcaagggacaggagaagcacctatgtgctgaagaaatctcatctatggttctaacaaagatgcgcaagactgcagaggagtttttagaattgc 3147654  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgat 261  Q
    |||| |||||||||||  |||| |||||||||||||| ||||||    
T  3147653 ctgtcaagaatgcagttgttaccgtacctgcttatttcaatgat 3147610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 262
Target Start/End: Complemental strand, 8647407 - 8647214
Alignment:
Q  66 gttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatca 165  Q
    ||||||||| || |||||||||   || || ||||||||||| |  ||| |||| || ||||||||||| || ||||  | |  |||||| |||||||||    
T  8647407 gttgtggccattcaaggtcatt---ggggtgaatgacaaacccatgattattgttaaatacaagggtgaagagaagcgttattgtgctgaggaaatatca 8647311  T
Q  166 tctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgcttattttaatgatt 262  Q
    ||  |||||||| || ||||||||||| ||||||||  || |||   ||| ||||| |||||||||||  ||||||| ||||| || || |||||||    
T  8647310 tcgatgatcctcacaaagatgcgagaggttgcagagaaatatttaatgtcccctgtaaagaatgcagttgttactgtgcctgcatacttcaatgatt 8647214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 201
Target Start/End: Original strand, 8640184 - 8640316
Alignment:
Q  66 gttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatca 165  Q
    ||||||||| || |||||||||   || || ||||||||||| || ||| |||| || ||||||||||| || ||||  |||  ||| || |||||||||    
T  8640184 gttgtggccattcaaggtcatt---ggggtgaatgacaaacccacgattattgttaaatacaagggtgaagagaagcgtttttgtgccgaggaaatatca 8640280  T
Q  166 tctgtgatcctctcacagatgcgagagattgcagag 201  Q
    ||| ||||||| ||  ||||||||||| ||||||||    
T  8640281 tctatgatcctttcgaagatgcgagaggttgcagag 8640316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 8671217 - 8671462
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||| ||||| | ||||||| |  ||||||| |  ||| || |||||||||| || ||||| ||||| ||||||||||||||||| |  |||  |    
T  8671217 gttaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattact 8671316  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    || || ||| | |||   || ||||| |||  |||||| |||||||| ||| || | ||  || ||||||||||| |||| ||||||| | |||||||||    
T  8671317 gtcaagtacgaaggtctagagaagcaattttgtgctgaggaaatatcttctatggtgcttacaaagatgcgagaggttgcggaggcatatctggagtcac 8671416  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
    | || |||||||| ||  |||| || || ||||| || ||||||||    
T  8671417 cggtcaagaatgccgttgttaccgtgccagcttacttcaatgattc 8671462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 27830626 - 27830723
Alignment:
Q  182 agatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccact 279  Q
    ||||||||||||| || ||||||| |||| | ||||| |||||||||||||| || || || || |||||||| ||||| || ||| ||| |||||||    
T  27830626 agatgcgagagatcgcggaggcatatttgcaatcaccggttaagaatgcagtaataaccgtgccagcttatttcaatgactctcaacgaaaagccact 27830723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 1302044 - 1301862
Alignment:
Q  19 ttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttg 118  Q
    |||||||| ||||| | |||||||||  ||||||| || ||  |  |||||||||| || ||||||||  ||||||| |||||||||||    ||| |||    
T  1302044 ttaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggtcatcgccggtgtgaatgacaaacccgtgattgttg 1301945  T
Q  119 tgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagag 201  Q
    | || ||||||||| |||| |||||||||   |  || |||||||||||| || ||||  |  |||||||||| |||||||||    
T  1301944 ttaagtacaagggtcaggagaagcacttttgcgtggaggaaatatcatctatggtccttacgaagatgcgagaaattgcagag 1301862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 8382467 - 8382708
Alignment:
Q  22 attggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtga 121  Q
    ||||||||||||||||||||||| ||| ||||||||||  |||  || ||||| ||||| ||  || | |||  | ||||||| ||    ||  |||| |    
T  8382467 attggaaggaaatatagtgattctattattcagaatgacatacaattatggccatttaaagtacttgctggttctgatgacaagcctgagataattgtta 8382566  T
Q  122 actacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgt 221  Q
    | || |||||||||||||| ||| ||  ||| || ||||| || ||| || |||||  | ||||||| ||||||||||||   ||||||||||||||| |    
T  8382567 agtataagggtgaggaaaaacacctttgtgccgaggaaatctcctctatggtcctcaaaaagatgcgtgagattgcagagaattttttggagtcacctat 8382666  T
Q  222 taagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
      |||||| |||  |||| || ||||| ||||| ||||||||    
T  8382667 cgagaatgtagttgttaccgtgcctgcatatttcaatgattc 8382708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 12529085 - 12528840
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    |||||||||||| || |||||||| ||||| |||||||| |||| |||||||||||| |||||||||| | | |||| ||||||||||||||  || |||    
T  12529085 gttaattggaagaaagtatagtgactccatagttcagaaggatcaactgttgtggccatttaaggtcactgctggtgctaatgacaaaccgaagatcctt 12528986  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    ||||||||||| ||  ||||| | ||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||| |||||| | |||||||    
T  12528985 gtgaactacaatgggaaggaacatcactttgttgctgaagaaatatcctctatgattctatcacagatgcgagagattgcagatgcatttcttgagtcac 12528886  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
    |||||||||||||||||||||| || || || ||||| ||||||||    
T  12528885 ctgttaagaatgcagtgattacggtgccagcgtatttcaatgattc 12528840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 262
Target Start/End: Complemental strand, 43745380 - 43745184
Alignment:
Q  66 gttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatca 165  Q
    ||||||||| || ||||||||||||||  | |||||||||||    |||  ||| || ||||||||  |||| |||||| |   ||| |||||||| |||    
T  43745380 gttgtggccgttcaaggtcatttccggattgaatgacaaacccgtgatttctgttaagtacaagggacaggagaagcacctatgtgccgaagaaatctca 43745281  T
Q  166 tctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgcttattttaatgatt 262  Q
    ||| |||| ||  || ||||||| |||||||||||| |||||||| | |  ||||| |||||||||||  ||||||| || |||||||| |||||||    
T  43745280 tctatgattctaacaaagatgcgtgagattgcagagacatttttgcaattgcctgtcaagaatgcagttgttactgtgccggcttatttcaatgatt 43745184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 35133027 - 35132767
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||| ||||| | ||||||| | ||||||||  ||||| ||||| | ||||| || ||||||| | ||||||| ||||||||||| |  |||       
T  35133027 gttaattggtaggaagtttagtgatcctattgttcaagatgatatactgctatggccattcaaggtcactgccggtgtaaatgacaaacccatgattacg 35132928  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    || || ||||||| ||||||||||||  |   ||| |||||| |||||||  || | ||| || |||||||||| |||||||  |||| ||| || |||     
T  35132927 gttaagtacaaggatgaggaaaagcaactctatgcggaagaagtatcatccatggtactcacaaagatgcgagaaattgcag--gcatatttagaatcaa 35132830  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccacta 280  Q
    ||||||||||||||||  ||||||| ||||||||||||| |||||| ||| ||| ||||||||    
T  35132829 ctgttaagaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccacta 35132767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 263
Target Start/End: Original strand, 9335525 - 9335723
Alignment:
Q  65 tgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc 164  Q
    |||||||||| || ||||| ||||| ||||||||||||||||| |  |||  ||| |||||||||||| | || |||||||||  |||||| ||||||||    
T  9335525 tgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattactgttaactacaagggtcaagagaagcacttttgtgctgaggaaatatc 9335624  T
Q  165 atctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
     ||| || | ||  || ||||| ||||| |||| ||||||| ||||| ||| || || |||||||| ||  |||| || || ||||| || ||||||||    
T  9335625 ttctatgttgcttacaaagatgagagaggttgcggaggcatatttggggtcgccggtcaagaatgccgttgttaccgtgccagcttacttcaatgattc 9335723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 9337586 - 9337646
Alignment:
Q  27 aaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatt 87  Q
    |||||| ||||| ||| | ||| |||||||||||||| |||| |||||||||||| |||||    
T  9337586 aaggaactatagcgatccaattattcagaatgatctaatgttatggccctttaagctcatt 9337646  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 30775663 - 30775571
Alignment:
Q  188 gagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccacta 280  Q
    ||||||||||||||   | |||||| || || ||||| |||||||| || ||||| ||||||||||| |||||| ||||  ||| ||||||||    
T  30775663 gagagattgcagagatgtatttggaatccccagttaaaaatgcagttatcactgtgcctgcttatttcaatgatgcacagcgaaaagccacta 30775571  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 16661579 - 16661824
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||| ||||||| ||||||  || ||||||| || ||| ||||||||||||| || ||||| ||| | ||||||||||||||||| || |||  |    
T  16661579 gttaattggtaggaaatttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgacaaacctacgattagt 16661678  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    || || ||||||||| |||| |||| | ||  ||| || ||||| |||||| |  ||||| || | |||   ||| |||||||||| | |||||| ||||    
T  16661679 gttaagtacaagggtcaggagaagctcctttgtgccgaggaaatctcatctattgtcctcacaaacatgaaggaggttgcagaggcttatttggaatcac 16661778  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
    | ||||| ||||||||  | ||||| |||||||||||||| |||||    
T  16661779 cggttaaaaatgcagttgtcactgttcctgcttattttaacgattc 16661824  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 12244994 - 12245238
Alignment:
Q  19 ttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttg 118  Q
    |||||||| ||||| | ||||||| | ||||||| | |||||  | | || ||||| || ||||||| | | ||||| ||||||||||| | ||||  ||    
T  12244994 ttaattggtaggaagtttagtgatcctattgttctggatgatgcattattatggccgttcaaggtcactgctggtgtcaatgacaaaccaataattactg 12245093  T
Q  119 tgaactacaagggtgaggaaaagca-ctttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    | |||||||| ||  |||| ||||| || ||| ||||||||| |||||||| || | ||  || |||||||||| ||||| ||||||| ||| || ||||    
T  12245094 ttaactacaaaggccaggagaagcagctatgt-gctgaagaagtatcatctatggtactaacaaagatgcgagaaattgctgaggcatatttagaatcac 12245192  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgattc 263  Q
    | || |||||||| ||  ||||||||||||||||||||| ||||||    
T  12245193 cggtaaagaatgctgttgttactgtacctgcttattttagtgattc 12245238  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 280
Target Start/End: Original strand, 12258332 - 12258430
Alignment:
Q  182 agatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccacta 280  Q
    |||||||||| ||||| ||||||| ||| || ||||| ||||||||||||||  ||||||| ||||| ||||||| |||||||||| | | ||||||||    
T  12258332 agatgcgagaaattgctgaggcatatttagaatcacccgttaagaatgcagttgttactgtgcctgcatattttagtgattcacaaaggaaagccacta 12258430  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 280
Target Start/End: Complemental strand, 14703825 - 14703727
Alignment:
Q  182 agatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgcttattttaatgattcacaatgaagagccacta 280  Q
    |||||||||| ||||| ||| ||| ||| |||||| ||||||||||||||||  |||| || ||||||||||||| |||||| ||| ||| ||||||||    
T  14703825 agatgcgagaaattgctgagacatatttagagtcaactgttaagaatgcagttgttacggtgcctgcttattttagtgattctcaaagaaaagccacta 14703727  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 16657236 - 16657349
Alignment:
Q  150 tgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgct 249  Q
    |||||| |||||||||||| |||||||  || ||||||||||  |||| ||||||||| ||||||| ||||| |||||||| ||  ||||||| || |||    
T  16657236 tgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgctgttgttactgtgccagct 16657335  T
Q  250 tattttaatgattc 263  Q
    || || ||||||||    
T  16657336 tacttcaatgattc 16657349  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 7542675 - 7542545
Alignment:
Q  150 tgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgct 249  Q
    |||||||||  |||||||| || | ||| || |||||||||| ||||| ||| | | ||| ||  || |||| | |||||||||  ||||||||||||||    
T  7542675 tgctgaagaggtatcatctatggtactcacaaagatgcgagaaattgctgagtcgtatttagaaacaactgtgacgaatgcagttgttactgtacctgct 7542576  T
Q  250 tattttaatgattcacaatgaagagccacta 280  Q
    |||||||||||||| ||| ||| ||||||||    
T  7542575 tattttaatgattctcaacgaaaagccacta 7542545  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 28220532 - 28220288
Alignment:
Q  18 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattctt 117  Q
    ||||||||| ||||| | |||||| ||  |||||||  ||||| ||  ||||||||| || ||||||||||||||    || |||||||| |  |||  |    
T  28220532 gttaattggtaggaagtttagtgactctgttgttcaagatgatataaagttgtggccattcaaggtcatttccggaacgaacgacaaacccatgatttct 28220433  T
Q  118 gtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcac 217  Q
    || || ||||||||  |||| |||||| |   ||| |||||||| |||||| || | ||  || ||||||| |||||||||||||| |||||||| |  |    
T  28220432 gttaagtacaagggacaggagaagcacctatgtgccgaagaaatctcatctatggttctaacaaagatgcgtgagattgcagaggcctttttggaatttc 28220333  T
Q  218 ctgttaagaatgcagtgattactgtacctgcttattttaatgatt 262  Q
    |||| ||||||||||| |||||||| ||||||||||| |||||||    
T  28220332 ctgtcaagaatgcagttattactgtgcctgcttatttcaatgatt 28220288  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 42555667 - 42555755
Alignment:
Q  154 gaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgt 242  Q
    |||||||| |||||| |||| ||  || |||||||  ||||||||||||||||||||||    ||||| |||||||||||  |||||||    
T  42555667 gaagaaatctcatctatgattctaacaaagatgcgcaagattgcagaggcatttttggaaatgcctgtcaagaatgcagttgttactgt 42555755  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 34466512 - 34466625
Alignment:
Q  150 tgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacctgct 249  Q
    |||||| ||||| |||||| ||||||| ||| ||||||| || | |||||||| || |||||| |||||  ||||||||||||| || || || ||||||    
T  34466512 tgctgaggaaatctcatctatgatcctttcaaagatgcgggatactgcagaggaatatttggaatcaccaattaagaatgcagttatcaccgtgcctgct 34466611  T
Q  250 tattttaatgattc 263  Q
    ||||||||||||||    
T  34466612 tattttaatgattc 34466625  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 280
Target Start/End: Complemental strand, 15595588 - 15595360
Alignment:
Q  47 ttgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactt 146  Q
    ||||||| |||||| ||  ||||||||| || |||||||||   ||||| ||||||||||| |  ||| |||| || ||||||||| | ||||||| |||    
T  15595588 ttgttcaaaatgatataaagttgtggccattcaaggtcatt---ggtgtgaatgacaaacccatgattattgttaaatacaagggtcaagaaaagcgctt 15595492  T
Q  147 tgttgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgcagtgattactgtacct 246  Q
    |  |||||| |||||||| ||| |||| |||  | ||||||||||| ||||||||  ||||||  |||| || || || ||||||||  |||| || |||    
T  15595491 ttgtgctgaggaaatatcgtctatgattctcaaaaagatgcgagaggttgcagagaaattttt--agtctcccgtaaacaatgcagttgttaccgtgcct 15595394  T
Q  247 gcttattttaatgattcacaatgaagagccacta 280  Q
    |||||| | |||||||| ||| ||| ||||||||    
T  15595393 gcttatctcaatgattctcaacgaaaagccacta 15595360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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