View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_12 (Length: 288)
Name: NF10637_low_12
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 261
Target Start/End: Original strand, 27635350 - 27635602
Alignment:
| Q |
2 |
ctcaggtttacacttttaccatcaa-cactcaaaaatattcttgatctcctctttatactaatactttgtttgatgatttttaggtactatcgatgccaa |
100 |
Q |
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| T |
27635350 |
ctcaggtttacacttttaccatcaaacactcaaaaatattcttgatctcctctttatactaatactttgtttgatgatttttaggtactatcgatgccaa |
27635449 |
T |
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| Q |
101 |
ggaacttaatgttgctatgaggtattgtattgttgttannnnnnncattaataactgtgtatgtatgttgttgttttcataacatacatcttattcttat |
200 |
Q |
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| T |
27635450 |
ggaacttaatgttgctatgaggtattgtattgttgttatttttttcattaataactg----tgtatgttgttgttttcataacatacatcttattctta- |
27635544 |
T |
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| Q |
201 |
ctttctttctttgcagggcccttggttttgagatgactgaagaggtacgtactccttctgt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27635545 |
---tctttctttgcagggcccttggttttgagatgactgaagaagtacgtactccttctgt |
27635602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 1679867 - 1679789
Alignment:
| Q |
52 |
ctttatactaatactttg--tttgatgatttttaggtactatcgatgccaaggaacttaatgttgctatgaggtattgt |
128 |
Q |
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| T |
1679867 |
ctttatgctaatactttgactttgatgatttttaggtactattgatgctaaggagctgaatgttgccatgaggtattgt |
1679789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 1679716 - 1679677
Alignment:
| Q |
208 |
tctttgcagggcccttggttttgagatgactgaagaggta |
247 |
Q |
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| T |
1679716 |
tctttgcagggcccttggatttgagatgacagaagaggta |
1679677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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