View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_13 (Length: 283)
Name: NF10637_low_13
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 34873826 - 34873608
Alignment:
| Q |
22 |
catgaaggaccactgcacaatcctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctc |
121 |
Q |
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| T |
34873826 |
catgaaggaccactgcacaatcctcttttctcatcaaccgttaccgttaagtccatttccttcacttcaccagaacctgcaagcacccttaaggcatctc |
34873727 |
T |
|
| Q |
122 |
aagaatttgttgcgatggttgcttttcatcatttcctgcaaaatgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttata |
221 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
34873726 |
aagagtttgttgcgatggttgcttttcatcatttcctgcaaaatgaaaacaccagttaagtcttgcaatctatgatgtttctttcctcaactgatatata |
34873627 |
T |
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| Q |
222 |
aatg--tttttcattgtct |
238 |
Q |
| |
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|||| ||||||||||||| |
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| T |
34873626 |
aatgcatttttcattgtct |
34873608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 34871798 - 34872016
Alignment:
| Q |
22 |
catgaaggaccactgcacaatcctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctc |
121 |
Q |
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|
||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
34871798 |
catgaaggaccactgcacaatcctcttttttcatcaaccgttaccgttaagtctatttccttcacttcaccaaaaccagcaagcacccttaaggcatctc |
34871897 |
T |
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| Q |
122 |
aagaatttgttgcgatggttgcttttcatcatttcctgcaaaatgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttata |
221 |
Q |
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| T |
34871898 |
aagagtttgctgcgatggttgcttttcatcatttcctgcaaaatgaaaacaacagttaagtcttgcaatccatgatgtttctttcctcaactgatttata |
34871997 |
T |
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| Q |
222 |
aatg--tttttcattgtct |
238 |
Q |
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|||| ||||||||||||| |
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| T |
34871998 |
aatgcatttttcattgtct |
34872016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 9911116 - 9911247
Alignment:
| Q |
24 |
tgaaggaccactgcacaatcctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaa |
123 |
Q |
| |
|
||||||||||| |||||| ||| ||||||| |||| ||||| ||||| |||||||||||| |||| || |||| |||| ||||| ||||| |||||| |
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| T |
9911116 |
tgaaggaccaccacacaattctcgtttctcaacaaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaa |
9911215 |
T |
|
| Q |
124 |
gaatttgttgcgatggttgcttttcatcattt |
155 |
Q |
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|| | || ||| |||||||||||||||||||| |
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| T |
9911216 |
gattctgctgccatggttgcttttcatcattt |
9911247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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