View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_14 (Length: 271)
Name: NF10637_low_14
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 5983317 - 5983078
Alignment:
| Q |
18 |
aactgaatcacacaaaaccaaatcggattacatctatataattttaaaacactagaattaagaatatggtctcaccaacaatgatcatgtaaacaatcag |
117 |
Q |
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| T |
5983317 |
aactgaatcacacaaaaccaaatcggattacatctatataattttaaaacactagaattaagaatatggtctcaccaacaatgatcatgtaaacaatcag |
5983218 |
T |
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| Q |
118 |
catgccagtgttaccgattacaatacatatctggaccgatatttttccgtatttcccaaaggcatcccccataagatttccataggaagaaagattccct |
217 |
Q |
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| T |
5983217 |
cataccagtgttaccgattacaatacatatctccaccgatatttttccgtatttcccaaaggcatcccccataagacttccataggaagaaagattccct |
5983118 |
T |
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| Q |
218 |
gccttcgaaaacctgatcacaaactcaattgacttctctg |
257 |
Q |
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| T |
5983117 |
gccctcgaaaacctaatcacaaactcaattgacttttctg |
5983078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 69 - 257
Target Start/End: Complemental strand, 5961842 - 5961654
Alignment:
| Q |
69 |
ctagaattaagaatatggtctcaccaacaatgatcatgtaaacaatcagcatgccagtgttaccgattacaatacatatctggaccgatatttttccgta |
168 |
Q |
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| T |
5961842 |
ctagacttaagaataaggtctcaccaataatgatcatgtaaacaatcagaataccaacgttagtgattataacacatatctctaccagtgcttttccgta |
5961743 |
T |
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| Q |
169 |
tttcccaaaggcatcccccataagatttccataggaagaaagattccctgccttcgaaaacctgatcacaaactcaattgacttctctg |
257 |
Q |
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| T |
5961742 |
tttcccaaaggtatctcccataagacttccataggaagaaagattccctgctctcgaaaacctgatcatgaactcaattgccttctctg |
5961654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 5967261 - 5967164
Alignment:
| Q |
160 |
ttttccgtatttcccaaaggcatcccccataagatttccataggaagaaagattccctgccttcgaaaacctgatcacaaactcaattgacttctctg |
257 |
Q |
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| T |
5967261 |
ttttccgtatttcccataggcatctcccataagatttccataggaagaaagtttccctgccctagaaaacctgattatgaaatcaattgacttctctg |
5967164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 5932865 - 5932768
Alignment:
| Q |
160 |
ttttccgtatttcccaaaggcatcccccataagatttccataggaagaaagattccctgccttcgaaaacctgatcacaaactcaattgacttctctg |
257 |
Q |
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| T |
5932865 |
ttttccatatctcccaaaggcatcccccataagacttccatatgaagaaagattccctgcccttgaaaacctgagcatgaattcaactgacttctctg |
5932768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 5967349 - 5967310
Alignment:
| Q |
69 |
ctagaattaagaatatggtctcaccaacaatgatcatgta |
108 |
Q |
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| T |
5967349 |
ctagacttaagaatatggtctcaccaataatgatcatgta |
5967310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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