View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10637_low_15 (Length: 257)

Name: NF10637_low_15
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10637_low_15
NF10637_low_15
[»] chr1 (2 HSPs)
chr1 (1-239)||(34593674-34593934)
chr1 (78-169)||(34577932-34578023)
[»] chr6 (3 HSPs)
chr6 (78-168)||(32590173-32590263)
chr6 (78-168)||(32600621-32600711)
chr6 (82-168)||(24883687-24883773)
[»] chr7 (2 HSPs)
chr7 (82-120)||(27526724-27526762)
chr7 (82-120)||(27532378-27532416)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34593934 - 34593674
Alignment:
Q  1 ctggaggatggaatggtaattaattaacaattgcaatttagagaatattgcactcagaaattaattgcttcttgaattattagatcctgacatgcttgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593934 ctggaggatggaatggtaattaattaacaattgcaatttagagaatattgcactcagaaattaattgcttcttgaattattagatcctgacatgcttgag 34593835  T
Q  101 gttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggtat-----gatgaaacaaaatttagatact--- 192  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||       
T  34593834 gttgggaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggtatgatgtgatgaaacaaaatttagatacttac 34593735  T
Q  193 --------------tagtattgtgatggcattgccattgtcatgacatcctttaagcaaat 239  Q
                  |||||||||||||||||||||||||||||||||||||||||||||||    
T  34593734 cagcccttgacttctagtattgtgatggcattgccattgtcatgacatcctttaagcaaat 34593674  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 34578023 - 34577932
Alignment:
Q  78 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggta 169  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||| | ||||||||||| ||||| ||||||||||||    
T  34578023 tattagatcctgatatgcttgaagttggaaatggaggcatgaccacagaggaatatcgtgcccatttcagcatttgggcattagctaaggta 34577932  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 32590263 - 32590173
Alignment:
Q  78 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt 168  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||    
T  32590263 tattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagcatctgggcattagctaaggt 32590173  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 32600711 - 32600621
Alignment:
Q  78 tattagatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt 168  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||    
T  32600711 tattagatcctgatatgcttgaagttggaaatggaggcatgacaacagaggaatatcgttcccatttcagcatctgggcattagctaaggt 32600621  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 24883687 - 24883773
Alignment:
Q  82 agatcctgacatgcttgaggttggaaatggaggcatgactacagaagaatatcgttcacatttcagcatatgggctttagctaaggt 168  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||| |||| ||||||    
T  24883687 agatcctgacatgcttgaagttggaaatggaggtatgacaacagaagaatatcgtgcccatttcagcatatgggcattagttaaggt 24883773  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 27526724 - 27526762
Alignment:
Q  82 agatcctgacatgcttgaggttggaaatggaggcatgac 120  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  27526724 agatcctgacatgcttgaggttggaaatggagggatgac 27526762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 27532378 - 27532416
Alignment:
Q  82 agatcctgacatgcttgaggttggaaatggaggcatgac 120  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  27532378 agatcctgatatgcttgaggttggaaatggagggatgac 27532416  T

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