View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10637_low_17 (Length: 242)

Name: NF10637_low_17
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10637_low_17
NF10637_low_17
[»] scaffold0400 (2 HSPs)
scaffold0400 (19-230)||(12302-12513)
scaffold0400 (27-138)||(6022-6133)
[»] scaffold0365 (2 HSPs)
scaffold0365 (19-230)||(12945-13156)
scaffold0365 (27-138)||(6666-6777)
[»] chr1 (11 HSPs)
chr1 (23-230)||(14533123-14533330)
chr1 (23-230)||(15016642-15016849)
chr1 (23-230)||(14467330-14467537)
chr1 (24-230)||(15001635-15001841)
chr1 (23-226)||(14503509-14503712)
chr1 (23-230)||(15024644-15024851)
chr1 (23-230)||(15031985-15032192)
chr1 (23-230)||(15010527-15010734)
chr1 (23-218)||(15036547-15036742)
chr1 (23-230)||(14523002-14523209)
chr1 (23-143)||(15040283-15040403)


Alignment Details
Target: scaffold0400 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 12302 - 12513
Alignment:
Q  19 tggtctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12302 tggtctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagtcttcaaatctccaacaataa 12401  T
Q  119 tttaacaggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagcta 218  Q
    |||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12402 tttaactggaagcataccgcaagaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccaaaggagcta 12501  T
Q  219 ggaaacttatct 230  Q
    ||||||||||||    
T  12502 ggaaacttatct 12513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 6022 - 6133
Alignment:
Q  27 atggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataatttaacag 126  Q
    |||||||| |||||||||||||||||||| ||| | || ||||||||||| ||||||||||| |||||||||||| || | | ||| |||||| || |||    
T  6022 atggaattgagtgataataatttttatggtcatctctctccaaattggggaaagtgcaagaatctcacaagccttaaagttttcaataataatatatcag 6121  T
Q  127 gaagcataccac 138  Q
    ||||||||||||    
T  6122 gaagcataccac 6133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 12945 - 13156
Alignment:
Q  19 tggtctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12945 tggtctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagtcttcaaatctccaacaataa 13044  T
Q  119 tttaacaggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagcta 218  Q
    |||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13045 tttaactggaagcataccgcaagaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccaaaggagcta 13144  T
Q  219 ggaaacttatct 230  Q
    ||||||||||||    
T  13145 ggaaacttatct 13156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 6666 - 6777
Alignment:
Q  27 atggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataatttaacag 126  Q
    |||||||| |||||||||||||||||||| ||| | || ||||||||||| ||||||||||| |||||||||||| || | | ||| |||||| || |||    
T  6666 atggaattgagtgataataatttttatggtcatctctctccaaattggggaaagtgcaagaatctcacaagccttaaagttttcaataataatatatcag 6765  T
Q  127 gaagcataccac 138  Q
    ||||||||||||    
T  6766 gaagcataccac 6777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 14533330 - 14533123
Alignment:
Q  23 ctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataattta 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14533330 ctacatggaattgagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagtcttcaaatctccaacaataattta 14533231  T
Q  123 acaggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagctaggaa 222  Q
    || ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  14533230 actggaagcatacctcaagaactaggtggagcaacacaattacaagaacttaatctgtcttcaaaccatcttactggaaaaattccagaggagctaggaa 14533131  T
Q  223 acttatct 230  Q
    ||||||||    
T  14533130 acttatct 14533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 15016642 - 15016849
Alignment:
Q  23 ctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataattta 122  Q
    |||||||||||| |||||||||||||| ||||| || || || ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||     
T  15016642 ctacatggaattgagtgataataatttgtatggtcaaatttctccaaattggggaaagtgcaagaatctcacaagccttaaaatctccaacaataatttg 15016741  T
Q  123 acaggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagctaggaa 222  Q
    |||||||||||||||| |||||| ||  |||| ||| | ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||| ||    
T  15016742 acaggaagcataccaccagaactaggcagagcaacaaatttacatgaacttaacttgtcttcaaaccatcttacggggaaaattccaaaggagctagaaa 15016841  T
Q  223 acttatct 230  Q
    ||||||||    
T  15016842 acttatct 15016849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 14467330 - 14467537
Alignment:
Q  23 ctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataattta 122  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||| |||||||| || |||| ||| |||||| ||||| |||||| ||| || ||||||    
T  14467330 ctacatggaattgagtgataataatttgtatggccatctatcaccgaattggggaaaatgcatgaatctcacatgccttaaaatcttcaataacaattta 14467429  T
Q  123 acaggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagctaggaa 222  Q
    |||||||||||||| | |||||| ||  |||| ||| | ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||    
T  14467430 acaggaagcataccgccagaactaggccgagcaacaaatttacatgaactaaacctgtcttcaaaccatcttacgggaaaaattccaaaggagctagaaa 14467529  T
Q  223 acttatct 230  Q
     |||||||    
T  14467530 gcttatct 14467537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 24 - 230
Target Start/End: Original strand, 15001635 - 15001841
Alignment:
Q  24 tacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataatttaa 123  Q
    |||||||| || |||||||||||||||||||| ||| | || ||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||| |    
T  15001635 tacatggatttgagtgataataatttttatggtcatctttctccaaattggggaaagtgcaagaatctcacaagcctaaaaatctccaacaataatttga 15001734  T
Q  124 caggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagctaggaaa 223  Q
    ||||||||||||||| |||||| ||  |||| ||| | ||||| || |||||  |||||||||||||||| | | ||||||||||||||||| ||| |||    
T  15001735 caggaagcataccaccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgcgaaaaattccaaaggagttagaaaa 15001834  T
Q  224 cttatct 230  Q
    |||||||    
T  15001835 cttatct 15001841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 14503509 - 14503712
Alignment:
Q  23 ctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataattta 122  Q
    |||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| ||||||||||  |||||||||||| |||||||||| || ||||||    
T  14503509 ctacatggaattgagtgaaaataatttgtatggccatctatcaccaaattggggaaagtgcaagagtctcacaagccttaaaatctccaataacaattta 14503608  T
Q  123 acaggaagcataccacaagaacttggtggag-cgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagctagga 221  Q
    |||||||  |||||||||||| ||||  ||| | |   | ||||| ||||||||  |||| |||||||||||||| ||||||||||||||||| ||||||    
T  14503609 acaggaaatataccacaagaa-ttggctgagacaattaatttacatgaacttaacttgtcatcaaaccatcttactggaaaaattccaaaggatctagga 14503707  T
Q  222 aactt 226  Q
    |||||    
T  14503708 aactt 14503712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 15024644 - 15024851
Alignment:
Q  23 ctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataattta 122  Q
    ||||||||| || | |||||||||||||||||| ||| | || ||||||||||| ||||||||||| |||||||||||| |||||||    |||||||||    
T  15024644 ctacatggacttgaatgataataatttttatggtcatctttctccaaattggggaaagtgcaagaatctcacaagccttaaaatctctggtaataattta 15024743  T
Q  123 acaggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagctaggaa 222  Q
    |||||||| ||||||| ||| || ||  | || ||| | ||||| || |||||  |||||||||||||||| ||||||||||||||||||||||||| ||    
T  15024744 acaggaagaataccaccagagctaggcagcgcaacaaatttacaggagcttaacttgtcttcaaaccatctaacgggaaaaattccaaaggagctagaaa 15024843  T
Q  223 acttatct 230  Q
    ||||||||    
T  15024844 acttatct 15024851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 15031985 - 15032192
Alignment:
Q  23 ctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataattta 122  Q
    ||||||||| || | |||||||||||||||||| ||| | || ||||||||||| ||||||||||| |||||||||||| |||||||    |||||||||    
T  15031985 ctacatggacttgaatgataataatttttatggtcatctttctccaaattggggaaagtgcaagaatctcacaagccttaaaatctctggtaataattta 15032084  T
Q  123 acaggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagctaggaa 222  Q
    |||||||| ||||||| ||| || ||  | || ||| | ||||| || |||||  |||||||||||||||| ||||||||||||||||||||||||| ||    
T  15032085 acaggaagaataccaccagagctaggcagcgcaacaaatttacaggagcttaacttgtcttcaaaccatctaacgggaaaaattccaaaggagctagaaa 15032184  T
Q  223 acttatct 230  Q
    ||||||||    
T  15032185 acttatct 15032192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 15010527 - 15010734
Alignment:
Q  23 ctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataattta 122  Q
    |||||||||||| |||||||||||||||||||| ||| | || ||||||||||| ||||||||||  |||||||||||  |||||||    |||||||||    
T  15010527 ctacatggaattgagtgataataatttttatggtcatctttctccaaattggggaaagtgcaagattctcacaagcctaaaaatctctggtaataattta 15010626  T
Q  123 acaggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagctaggaa 222  Q
    |||||||| ||||||| |||||| ||  | || ||| | ||||| || |||||  |||||||||||||||| | ||||||||||||||||||| ||| |     
T  15010627 acaggaagaataccaccagaactaggaagtgcaacaaatttacaggagcttaacttgtcttcaaaccatctaatgggaaaaattccaaaggagttagaat 15010726  T
Q  223 acttatct 230  Q
    ||||||||    
T  15010727 acttatct 15010734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 15036547 - 15036742
Alignment:
Q  23 ctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataattta 122  Q
    ||||||||| || |||||||||||||||||||| ||| | || ||||||||||| ||||||||||| |||||||||||  ||||||||   |||||||||    
T  15036547 ctacatggacttgagtgataataatttttatggtcatctttctccaaattggggaaagtgcaagaatctcacaagcctaaaaatctccggtaataattta 15036646  T
Q  123 acaggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagcta 218  Q
    || ||||| ||||||| |||||| ||  |||| ||| | ||||| || |||||  ||||||||||| |||| | ||||||||||||||||||||||    
T  15036647 actggaagaataccaccagaactaggcagagcaacaaatttacaggagcttaacttgtcttcaaacgatctaatgggaaaaattccaaaggagcta 15036742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 14523209 - 14523002
Alignment:
Q  23 ctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataattta 122  Q
    |||||| ||||||||||||||||||||||||||  || | || ||||||||||| ||||||||||| || ||||||||| |||||||||| |||||||||    
T  14523209 ctacatagaattaagtgataataatttttatggttatctttctccaaattgggggaagtgcaagaatctgacaagccttaaaatctccaataataattta 14523110  T
Q  123 acaggaagcataccacaagaacttggtggagcgacacaattacaagaacttaatctgtcttcaaaccatcttacgggaaaaattccaaaggagctaggaa 222  Q
    | |||||||||||||| |||| | | || ||| ||  | |||||   |||| |  |||| ||||| || ||||  ||||||||||||||||| |||||||    
T  14523109 ataggaagcataccaccagaattggctgaagcaaccaatttacatatacttgacttgtcctcaaatcaacttataggaaaaattccaaaggatctaggaa 14523010  T
Q  223 acttatct 230  Q
    ||||||||    
T  14523009 acttatct 14523002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 15040283 - 15040403
Alignment:
Q  23 ctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagccttcaaatctccaacaataattta 122  Q
    |||||||||||| |||| |||||| | || ||||||||| ||||| |||||||| ||  ||||||| |||| ||||||| ||||||||||||||||||||    
T  15040283 ctacatggaattgagtggtaataaatattttggccatatttcacctaattggggaaaacgcaagaatctcataagccttaaaatctccaacaataattta 15040382  T
Q  123 acaggaagcataccacaagaa 143  Q
    ||||| || ||||||| ||||    
T  15040383 acagggagtataccactagaa 15040403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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