View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_22 (Length: 227)
Name: NF10637_low_22
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_22 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21522790 - 21522566
Alignment:
| Q |
1 |
acacacatacttgttctagaatacgtcgatcagatctcccactgactatctccaccaggaggattccgaatctgtaaacatctgatttacgtgtcagcgg |
100 |
Q |
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| T |
21522790 |
acacacatacttgttctagaatacgtcgatcagatctcccactgactatctccaccaggaggattccgaatctgtaaacatctgatttacgtgtcagcgg |
21522691 |
T |
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| Q |
101 |
ccccataaacacatcctctggtgccataggacatctgaaataaaacacacaaaattgaagaaactaggcgatcgttgaatgaaagaatgaaaataatata |
200 |
Q |
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| T |
21522690 |
ccccataaacacatcctctggtgccataggacatctgaaataaaacacacaacattgaagaaacaaggcgattgatgaatgaaagaatgaaaataata-- |
21522593 |
T |
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| Q |
201 |
tatacaaagctattcatacatgcttcc |
227 |
Q |
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|||||||||| | |||||||||||||| |
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| T |
21522592 |
tatacaaagcaactcatacatgcttcc |
21522566 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 21529249 - 21529189
Alignment:
| Q |
36 |
ctcccactgactatctccaccaggaggattccgaatctgtaaacatctgatttacgtgtca |
96 |
Q |
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||||||||||||||||| || ||||| | ||| || ||||||| ||||| ||||||||||| |
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| T |
21529249 |
ctcccactgactatctcaacaaggagtactccaaaactgtaaatatctgctttacgtgtca |
21529189 |
T |
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