View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_23 (Length: 224)
Name: NF10637_low_23
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 39861594 - 39861400
Alignment:
| Q |
15 |
agggaacactccaatttcttgaaacaaaatgttcactgcatagcacaaacaacaagagctcttggtgaataccaccacacccttttctgtagccaacctc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |
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| T |
39861594 |
agggaacactccaatttcttgaaacaaaatgttcactgcatagcacaaacaacaagagctcttggtgaaaatcacaacacccttttctgtagccaacctc |
39861495 |
T |
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| Q |
115 |
atcaccttctccatcttaatataactggttccaaataaaatgtactaaaaattattttctaaatacaaaaattggaaatatttagaaacctatat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39861494 |
atcaccttctccatcttaatataactggttccaaataaaatgtactaaaaattattttctaaatacaaaaattggaaatatttagaaacctatat |
39861400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 39866048 - 39865925
Alignment:
| Q |
15 |
agggaacactccaatttcttgaaacaaaatgttcactgcatagcacaaacaacaagagctcttggtgaataccaccacacccttttctgtagccaacctc |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39866048 |
agggtacactccaatttcttgaaacaaaatgttcactgcatagcatagacaacaagagctcttggtgaataccaccacacccttttctgtagccaacctc |
39865949 |
T |
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| Q |
115 |
atcaccttctccatcttaatataa |
138 |
Q |
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| T |
39865948 |
atcaccttctccatgttaatataa |
39865925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 44001529 - 44001635
Alignment:
| Q |
25 |
ccaatttcttgaaacaaaatgttcactgcatagcacaaacaacaagagctcttggtgaataccaccacacccttttctgtagccaacctcatcaccttct |
124 |
Q |
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|||| ||||||||||| |||||| ||||||||||| | |||||| || ||||| ||||| | ||||||||| ||||| | |||||||||||||| || | |
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| T |
44001529 |
ccaagttcttgaaacagaatgttaactgcatagcatagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgt |
44001628 |
T |
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| Q |
125 |
ccatctt |
131 |
Q |
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||||||| |
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| T |
44001629 |
ccatctt |
44001635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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