View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_3 (Length: 385)
Name: NF10637_low_3
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 53 - 369
Target Start/End: Complemental strand, 41556459 - 41556134
Alignment:
| Q |
53 |
ccagcagcagcaggaggagtgtgaacaataacatcatgaaatgatttctcagtaagttgaagagcaaaagaatcttggaacatagtgtgttctttttcaa |
152 |
Q |
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| T |
41556459 |
ccagcagcagcaggaggagtgtgaacaataacatcatgaaatgatttctcagtgagttgaagagcaaaagaatcttggaacatagtgtattctttttcaa |
41556360 |
T |
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| Q |
153 |
agtcttcttccatgagaaattggtttatagaaccaagaacagtggaagactcctcatgttcatgatgttggaacatattgtagtcttcctctatgtcatc |
252 |
Q |
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| T |
41556359 |
agtcttcttccatgagaaattggtttatagaaccaagaacagtggaagactcctcatgttcatgatgttggaacatattgtagtcttcctctatgtcatc |
41556260 |
T |
|
| Q |
253 |
atcttccatgagaaatttgtttataaaaccaagaatagt---------ggaagagaattcactctcactatgttcatggtgtggaccaacaactcttttg |
343 |
Q |
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| T |
41556259 |
atcttccatgagaaatttgtttataaaaccaagaatagtggaaatagtggaagagaattcactctcactatgttcatggtgtggaccaacaactcttttg |
41556160 |
T |
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| Q |
344 |
tccatcgaccatttacaacaaattat |
369 |
Q |
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|||||||||||||||||||||||||| |
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| T |
41556159 |
tccatcgaccatttacaacaaattat |
41556134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 66 - 349
Target Start/End: Complemental strand, 41589088 - 41588805
Alignment:
| Q |
66 |
gaggagtgtgaacaataacatcatgaaatgatttctcagtaagttgaagagcaaaagaatcttggaacatagtgtgttctttttcaaagtcttcttccat |
165 |
Q |
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| T |
41589088 |
gaggagtgtgagcaataacatcatgaaatgatttttcagtaagttgaagagcaaaagaatcttggaactgagtgtactctttttcaaagtcttcttccat |
41588989 |
T |
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| Q |
166 |
gagaaattggtttatagaaccaagaacagtggaagactcctcatgttcatgatgttggaacatattgtagtcttcctctatgtcatcatcttccatgaga |
265 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41588988 |
gagaaattggtttatagaaccaagaacagtggaagacacttcatgttcatgatgttggaacatattgtagtcttcctctgagtcatcatcttccatgaga |
41588889 |
T |
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| Q |
266 |
aatttgtttataaaaccaagaatagtggaagagaattcactctcactatgttcatggtgtggaccaacaactcttttgtccatc |
349 |
Q |
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| T |
41588888 |
aatttgtttataaaaccaagaacagtggaagtgaattcactcttactttgttcatggagtggatcaacaactcctttgtccatc |
41588805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 66 - 348
Target Start/End: Complemental strand, 41570143 - 41569861
Alignment:
| Q |
66 |
gaggagtgtgaacaataacatcatgaaatgatttctcagtaagttgaagagcaaaagaatcttggaacatagtgtgttctttttcaaagtcttcttccat |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41570143 |
gaggagtgtgaacaataacatcatgaaatgatttctcagtaagttgaagagcaaaggaatcttggaacatagtgtattctttttcaaagtcttcttccat |
41570044 |
T |
|
| Q |
166 |
gagaaattggtttatagaaccaagaacagtggaagactcctcatgttcatgatgttggaacatattgtagtcttcctctatgtcatcatcttccatgaga |
265 |
Q |
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||||||| |||||||| |||||||| || |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41570043 |
gagaaatcggtttatataaccaagagcattggaagacccatcatgttcattgtgttggaacatattgtagtcttcctctatgtcatcatcttccatgaga |
41569944 |
T |
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| Q |
266 |
aatttgtttataaaaccaagaatagtggaagagaattcactctcactatgttcatggtgtggaccaacaactcttttgtccat |
348 |
Q |
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| T |
41569943 |
aatttgcttacataaccaagaataggggaagagaattcactctcactttgttcatggtgtgaatcaacaattcttttgtccat |
41569861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 66 - 169
Target Start/End: Complemental strand, 41579149 - 41579046
Alignment:
| Q |
66 |
gaggagtgtgaacaataacatcatgaaatgatttctcagtaagttgaagagcaaaagaatcttggaacatagtgtgttctttttcaaagtcttcttccat |
165 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
41579149 |
gaggagtgtgaacaataacatcatgaaatgatttttcagtaagttgaagagtaaaagaatcttggaacatagtgtactccttttcaaagtcttcttccat |
41579050 |
T |
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| Q |
166 |
gaga |
169 |
Q |
| |
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|||| |
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| T |
41579049 |
gaga |
41579046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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