View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_6 (Length: 353)
Name: NF10637_low_6
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 47476880 - 47477207
Alignment:
| Q |
11 |
cagagagaccactctatttgtaaagctgtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaactt |
110 |
Q |
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| T |
47476880 |
cagagagaccactctatttgtaaagctgtgataggatgaacagcatgtgctctccttattgtatcggggctggcttcagatagtccaatatatttaactt |
47476979 |
T |
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| Q |
111 |
ttccctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaa |
210 |
Q |
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| T |
47476980 |
ttccctcttccaccagtttcttaagttcacctacctatagcacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaa |
47477079 |
T |
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| Q |
211 |
ttgtcaataactcaaccctacaagaccagcttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatatcaacatg |
310 |
Q |
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| T |
47477080 |
ttgtcaataactcaaccctacaagaccagtttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatatcaacatg |
47477179 |
T |
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| Q |
311 |
tatatgtaacgtgttgccgtgtactatg |
338 |
Q |
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| T |
47477180 |
tatatgtaacttgttgccgtgtactatg |
47477207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 47473585 - 47473874
Alignment:
| Q |
14 |
agagaccactctatttgtaaagctgtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttc |
113 |
Q |
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| T |
47473585 |
agagaccactctatttgtacagcagtgatgggatgaacagcatgcgctctccttattgtatcagggctggcttcagatagtccaatatacttaacttttc |
47473684 |
T |
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| Q |
114 |
cctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattg |
213 |
Q |
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| T |
47473685 |
cctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataatcttcaaatttgaattg |
47473784 |
T |
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| Q |
214 |
tcaataactcaaccctacaagaccagcttataaaggtaggggtgtctcccatttataatttgagactctcaacaaataatctaaccatat |
303 |
Q |
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| T |
47473785 |
tcaataactcaaccctagaaaaccagcttatcaaggtatgggagtctcccatttataatttgggactctcaacaaataatgtaagcatat |
47473874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 47486300 - 47486483
Alignment:
| Q |
14 |
agagaccactctatttgtaaagctgtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttc |
113 |
Q |
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||||||||||| ||||||| ||||||||| ||||||| || ||||||||||||||||| ||||| ||||||||||| || |||||||| ||||||| |
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| T |
47486300 |
agagaccactccatttgtacagctgtgatgggatgaatggtgtgcgctctccttattgtatctgggctagcttcagatagccctatatacttcacttttc |
47486399 |
T |
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| Q |
114 |
cctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataat |
197 |
Q |
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| T |
47486400 |
cttcttccaccaacttcataagttcacctacctgtaatagaagaaacttgttaacaatgcatctagtgtaataagtcagataat |
47486483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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