View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_7 (Length: 329)
Name: NF10637_low_7
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 23 - 319
Target Start/End: Original strand, 46962239 - 46962535
Alignment:
| Q |
23 |
gaggtataggctgcaggtccctgaaggtaaatactacccggtagaaaacaagcatccgaatgtgccaggtttcgctgttccatatccccgacggggcact |
122 |
Q |
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| T |
46962239 |
gaggtataggctgcaggtacctgaaggtaaatactacccggtagaaaacaagcatccgaatgtgccaggtttcgctgttccatatccccgacggggcact |
46962338 |
T |
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| Q |
123 |
ttcaatcacgtggagaaaccgtatggttggatttttaagatgtgtgaaaatgatgcatcatttaccatggaggaatcactaccacatcagaggtggaaat |
222 |
Q |
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| T |
46962339 |
ttcaatcacatggagaaaccgtatggttggatttttaagatgtgtgaaaatgatgcatcatttaccatggaggaatcactaccacatcagaggtggaaat |
46962438 |
T |
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| Q |
223 |
atatccaaaatcgaatggtggaacccaaaaaccagtatcagggtcttagttttaaaggctcaagaaattgcacttgcttcactgttaagggtctctg |
319 |
Q |
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| T |
46962439 |
atatccaaaatcgaatggtggaacccaaaaaccagtatcagggtcttagttttaaaggctcaagaaattgcacttgcttcacagttaagggtctctg |
46962535 |
T |
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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 134 - 319
Target Start/End: Original strand, 25184825 - 25185009
Alignment:
| Q |
134 |
ggagaaaccgtatggttggatttttaagatgtgtgaaaatgatgcatcatttaccatggaggaatcactacc-acatcagaggtggaaatatatccaaaa |
232 |
Q |
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||||||||| ||| ||||||||||||||||| |||||| ||||||||||| || ||||| |||||||| || || |||||||||| || |||| | | |
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| T |
25184825 |
ggagaaaccagatgattggatttttaagatgtatgaaaaggatgcatcattgacaatggatgaatcactgcctccaatagaggtggaagtagatccgaca |
25184924 |
T |
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| Q |
233 |
tcgaatggtggaacccaaaaaccagtatcagggtcttagttttaaaggctcaagaaattgcacttgcttcactgttaagggtctctg |
319 |
Q |
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| T |
25184925 |
tcgaatgttgagaccc-aaaaccagtatcagggtcttagtttt-gatgctgaagaaattgcactcgcatcacaattaagggtctctg |
25185009 |
T |
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