View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10637_low_8 (Length: 323)
Name: NF10637_low_8
Description: NF10637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10637_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 36978304 - 36978013
Alignment:
| Q |
20 |
ctaagtactatgaaaaatttaaaacatcttgacctatctcatgccaattttaaggggaacctcttagataatcttggaaacctttctctacttgaatcac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978304 |
ctaagtactatgaaaaatttaaaacatcttgacctatctcatgccaattttaaggggaacctcttagataatcttggaaacctttctctacttgaatcac |
36978205 |
T |
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| Q |
120 |
ttgatttgagtggcaatagtttctatgtcaataatctaaaatggcttcatggactttcttccttgaaaattcttgatttaagtggtgttgatcttagtcg |
219 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36978204 |
ttcatttgagtggcaatagtttctatgtcaataatctaaaatggcttcatggactttcttccttgaaaattcttgatttaagtggtgttgatcttagtcg |
36978105 |
T |
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| Q |
220 |
ttgtcaaaatgattggtttcacgacatcagagtgatacttcattctcttgatacattgcgtttatcggattgccaacttcacaaactaccta |
311 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36978104 |
ttgtcaaaatgattggtttcatgacatcagagtgatacttcattctcttgatacattgcgtttatcgggttgccaacttcacaaactaccta |
36978013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 28 - 311
Target Start/End: Complemental strand, 36966554 - 36966271
Alignment:
| Q |
28 |
tatgaaaaatttaaaacatcttgacctatctcatgccaattttaaggggaacctcttagataatcttggaaacctttctctacttgaatcacttgatttg |
127 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||||||||| |
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| T |
36966554 |
tatgcaaaatttaaaacatcttgacctatctcatgccaattttaagggcaacctctctgataatcttgtaaacctgtctctacttgaatcacttgatttg |
36966455 |
T |
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| Q |
128 |
agtggcaatagtttctatgtcaataatctaaaatggcttcatggactttcttccttgaaaattcttgatttaagtggtgttgatcttagtcgttgtcaaa |
227 |
Q |
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| T |
36966454 |
agtggcaatgctttctatgtcaataatctaaaatggcttcaaggactttcttccatgaaaattctcgatttaagtggtgttgatcttagtagttgtgaaa |
36966355 |
T |
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| Q |
228 |
atgattggtttcacgacatcagagtgatacttcattctcttgatacattgcgtttatcggattgccaacttcacaaactaccta |
311 |
Q |
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||||||||||||| || || |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
36966354 |
atgattggtttcatgatataagagcaatacttcattctcttgaaacattgcgtttatcgggttgccaacttcacaaactaccta |
36966271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 5866767 - 5867058
Alignment:
| Q |
20 |
ctaagtactatgaaaaatttaaaacatcttgacctatctcatgccaattttaaggggaacctcttagataatcttggaaacctttctctacttgaatcac |
119 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5866767 |
ctaagtactacgaaaaatttaaaacatcttgacctatctcatgccaattttaaggggaacctcttagataatcttggaaacctttctctacttgaatcac |
5866866 |
T |
|
| Q |
120 |
ttgatttgagtggcaatagtttctatgtcaataatctaaaatggcttcatggactttcttccttgaaaattcttgatttaagtggtgttgatcttagtcg |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5866867 |
ttgatttgagtgacaatagtttctatgtcaataatctaaaatggcttcatggactttcttccttgaaaattcttgatttaagtggtgttgttcttagtcg |
5866966 |
T |
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| Q |
220 |
ttgtcaaaatgattggtttcacgacatcagagtgatacttcattctcttgatacattgcgtttatcggattgccaacttcacaaactaccta |
311 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5866967 |
ttgtcaaaatgattggtttcatgacatcagagtgatacttcattctcttgatacattgcgtttatcgggttgccaacttcacaaactaccta |
5867058 |
T |
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