View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10638_high_3 (Length: 255)

Name: NF10638_high_3
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10638_high_3
NF10638_high_3
[»] chr4 (2 HSPs)
chr4 (144-242)||(29083270-29083368)
chr4 (20-79)||(29083433-29083492)
[»] chr3 (1 HSPs)
chr3 (154-205)||(48721968-48722019)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 29083368 - 29083270
Alignment:
Q  144 tagaacccagctgctactgtcacggacatgaggctgccatataccgaagggactgcagacctgaaaaacaggaagaaacagaaaagcagcataccccag 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  29083368 tagaacccagctgctactgtcacggacatgaggctgccatataccaaagggactgtagacctgaaaaacaggaagaaacagaaaggcagcataccccag 29083270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 29083492 - 29083433
Alignment:
Q  20 aaaacacgcaggcagaacatacataacacaggtctctgatataccagaagaccagtagct 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29083492 aaaacacgcaggcagaacatacataacacaggtctctgatataccagaagaccagtagct 29083433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 48722019 - 48721968
Alignment:
Q  154 ctgctactgtcacggacatgaggctgccatataccgaagggactgcagacct 205  Q
    ||||| |||||||||||||||| |||||||||||| || |||||||||||||    
T  48722019 ctgctgctgtcacggacatgagactgccatataccaaaaggactgcagacct 48721968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University