View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10638_high_6 (Length: 213)

Name: NF10638_high_6
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10638_high_6
NF10638_high_6
[»] chr7 (3 HSPs)
chr7 (13-197)||(34450612-34450796)
chr7 (13-178)||(34466707-34466872)
chr7 (13-197)||(34440645-34440829)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 34450796 - 34450612
Alignment:
Q  13 aagaattgcagatgcagccagtgttccgggatctgttgtttgaagtgttgagttgagaaatgttgctccatttgactctttaaacagatatgtcacccaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34450796 aagaattgcagatgcagccagtgttccgggatctgttgtttgaagtgttgagttgagaaatgttgctccatttgactctttaaacagatatgtcacccaa 34450697  T
Q  113 tagctaggagtcccataaacttgattgctgctaaagacaattgcatctggattccatctacaaaaattgcacatctcaatgttat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34450696 tagctaggagtcccataaacttgattgctgctaaagacaattgcatctggattccatctacaaaaattgcacatctcaatgttat 34450612  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 34466872 - 34466707
Alignment:
Q  13 aagaattgcagatgcagccagtgttccgggatctgttgtttgaagtgttgagttgagaaatgttgctccatttgactctttaaacagatatgtcacccaa 112  Q
    ||||||||||||||||  |||||  || ||||| | ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34466872 aagaattgcagatgcaatcagtgagccaggatcaggtgtttgaagttgtgagttgagaaatgttgctccatttgactctttaaacatatatgtcacccaa 34466773  T
Q  113 tagctaggagtcccataaacttgattgctgctaaagacaattgcatctggattccatctacaaaaa 178  Q
    |||||||||||||||||| |||||| |||| |||| |||||||||||||||||||| |||||||||    
T  34466772 tagctaggagtcccataagcttgatagctgttaaaaacaattgcatctggattccaactacaaaaa 34466707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 34440829 - 34440645
Alignment:
Q  13 aagaattgcagatgcagccagtgttccgggatctgttgtttgaagtgttgagttgagaaatgttgctccatttgactctttaaacagatatgtcacccaa 112  Q
    |||||||||||||||||||||  |||||||||| | ||||||||||  |||||||| ||| |||||||||||||||||||||||||||     |  ||||    
T  34440829 aagaattgcagatgcagccagcattccgggatcaggtgtttgaagttgtgagttgataaaagttgctccatttgactctttaaacagaacctgcgtccaa 34440730  T
Q  113 tagctaggagtcccataaacttgattgctgctaaagacaattgcatctggattccatctacaaaaattgcacatctcaatgttat 197  Q
    ||||||||||| |||||   ||||| ||||  ||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  34440729 tagctaggagttccatacgattgatcgctgtcaaagacaattgcatctgggctccaactacaaaaattgcacatctcaatgttat 34440645  T

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