View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_10 (Length: 317)
Name: NF10638_low_10
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 25589654 - 25589959
Alignment:
| Q |
1 |
tcctatttaatgttgttctctctttgtttctgctggtggaatcgatggttgttgttgcaggtattgaatgctatccaggaactagaattggaaggaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589654 |
tcctatttaatgttgttctctctttgtttctgctggtggaatcgatggttgttgttgcaggtattgaatgctatccaggaactagaattggaaggaaaga |
25589753 |
T |
|
| Q |
101 |
aagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacctgagtgatatttctgctttgtgtcattctcgtaaaattcctttgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589754 |
aagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacttgagtgatatttctgctttgtgtcattctcgtaaaattcctttgat |
25589853 |
T |
|
| Q |
201 |
tgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctccagcaaggggctgatctaactgtacaatctactcacaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25589854 |
tgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctccagcaaggggctgatctaactgtacaatctactcacaag |
25589953 |
T |
|
| Q |
301 |
gttctt |
306 |
Q |
| |
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|||||| |
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| T |
25589954 |
gttctt |
25589959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 25599306 - 25599611
Alignment:
| Q |
1 |
tcctatttaatgttgttctctctttgtttctgctggtggaatcgatggttgttgttgcaggtattgaatgctatccaggaactagaattggaaggaaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25599306 |
tcctatttaatgttgttctctctttgtttctgctggtggaatcgatggttgttgttgcaggtattgaatgctatccaggaactagaattggaaggaaaga |
25599405 |
T |
|
| Q |
101 |
aagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacctgagtgatatttctgctttgtgtcattctcgtaaaattcctttgat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25599406 |
aagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacttgagtgatatttctgctttgtgtcattctcgtaaaattcctttgat |
25599505 |
T |
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| Q |
201 |
tgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctccagcaaggggctgatctaactgtacaatctactcacaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25599506 |
tgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctccagcaaggggctgatctaactgtacaatctactcacaag |
25599605 |
T |
|
| Q |
301 |
gttctt |
306 |
Q |
| |
|
|||||| |
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|
| T |
25599606 |
gttctt |
25599611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 46 - 306
Target Start/End: Original strand, 25584816 - 25585076
Alignment:
| Q |
46 |
tggttgttgttgcaggtattgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgttt |
145 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
25584816 |
tggttggtgttgcaggtattgagtgctatccaggaactagaattggaaggaaaaaaagcagcagcagttttcatcacttcacctacttatcatggtattt |
25584915 |
T |
|
| Q |
146 |
gcagtaacctgagtgatatttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaact |
245 |
Q |
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|||||||| ||||||| ||||| | ||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
25584916 |
gcagtaacttgagtgacatttccgagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaact |
25585015 |
T |
|
| Q |
246 |
gcctagctcagccctccagcaaggggctgatctaactgtacaatctactcacaaggttctt |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
25585016 |
gcctagctcagccctccagcaaggggctgatctaactgtacagtctactcacaaggttctt |
25585076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 10168181 - 10168241
Alignment:
| Q |
67 |
aatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcac |
127 |
Q |
| |
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|||||||| || |||||||||||||||| || |||| |||| || ||||||||||||||| |
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| T |
10168181 |
aatgctatacacaaactagaattggaagggaaaaaagtagcaacaattttcatcacttcac |
10168241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 42076828 - 42076889
Alignment:
| Q |
60 |
ggtattgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatca |
121 |
Q |
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|||||||||| |||||||||||| |||| |||||||| |||||||||||| ||| ||||| |
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| T |
42076828 |
ggtattgaatactatccaggaacaagaagcagaaggaaaaaaagcagcagcattttacatca |
42076889 |
T |
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