View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10638_low_14 (Length: 307)

Name: NF10638_low_14
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10638_low_14
NF10638_low_14
[»] chr1 (1 HSPs)
chr1 (17-307)||(7172983-7173273)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 7173273 - 7172983
Alignment:
Q  17 aataatcattcaaaatacaaaacaaaaactcatagaaacattttaacaaacaccatacaatcaaattacaattccaacacaaataactcacttcttcttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7173273 aataatcattcaaaatacaaaacaaaaactcatagaaacattttaacaaacaccatacaatcaaattacaattccaacacaaataactcacttcttcttc 7173174  T
Q  117 cctccaccacttttaatccctttacgtctagaaggaataacaatctcacctttaagcacaggaatctccataatctgtgacaattcaccgaacttcttac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7173173 cctccaccacttttaatccctttacgtctagaaggaataacaatctcacctttaagcacaggaatctccataatctgtgacaattcaccgaacttcttac 7173074  T
Q  217 gaaacttctccacctgatcatcactcaccataagagcagacctgttacctaggtaaaatggatggttcccagaccaaacatcaaccacata 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7173073 gaaacttctccacctgatcatcactcaccataagagcagacctgttacctaggtaaaatggatggttcccagaccaaacatcaaccacata 7172983  T

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