View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10638_low_15 (Length: 303)
Name: NF10638_low_15
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 83 - 287
Target Start/End: Complemental strand, 42950697 - 42950493
Alignment:
| Q |
83 |
aaccattggcgaaaggcttcttctaagttataacaagcctgaaaccatgaacttgtnnnnnnngaaatggcagtcctaactcctaactagacagattcat |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
42950697 |
aaccattggcgaaaggcttcttctaagttataacaagtctgaaaccatgaacttgtaaaaaaagaaatgacagtcctaactcctaactaaacagattcat |
42950598 |
T |
|
| Q |
183 |
tcaataaatcaccaacaacaaaaattaaacaagtttgacatattcaagaacaaaggcatatttagctgaataaattactggctgtaataattatgatcat |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42950597 |
tcaataaatcaccaataacaaaaattaaacaagtttgacatattcaagaacaaaggcatatttagctgaataaattactggctgtaataattatgatcat |
42950498 |
T |
|
| Q |
283 |
gatga |
287 |
Q |
| |
|
||||| |
|
|
| T |
42950497 |
gatga |
42950493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 42950810 - 42950730
Alignment:
| Q |
10 |
cacagacgacagcctatatccagatttgttaaccaaaataaaagaatctctacacagatactgcacaattctaaaccattg |
90 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42950810 |
cacaaacgacagcctatatccagatttgttaaccaaaataaaagaatctctacacagatactgcacaattctaaaccattg |
42950730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 146 - 283
Target Start/End: Complemental strand, 2852231 - 2852094
Alignment:
| Q |
146 |
gaaatggcagtcctaactcctaactagacagattcattcaataaatcaccaacaacaaaaattaaacaagtttgacatattcaagaacaaaggcatattt |
245 |
Q |
| |
|
|||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
2852231 |
gaaaaggcagtcctaacttctagctagaccgattcattcaataaatcaccaacaacaaaaattaaacaagcttgacatattcaacaacaaaggcatattt |
2852132 |
T |
|
| Q |
246 |
agctgaataaattactggctgtaataattatgatcatg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2852131 |
agctgaataaattactggctgtaataattattatcatg |
2852094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 146 - 283
Target Start/End: Complemental strand, 2904263 - 2904126
Alignment:
| Q |
146 |
gaaatggcagtcctaactcctaactagacagattcattcaataaatcaccaacaacaaaaattaaacaagtttgacatattcaagaacaaaggcatattt |
245 |
Q |
| |
|
|||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
2904263 |
gaaaaggcagtcctaacttctagctagaccgattcattcaataaatcaccaacaacaaaaattaaacaagcttgacatattcaacaacaaaggcatattt |
2904164 |
T |
|
| Q |
246 |
agctgaataaattactggctgtaataattatgatcatg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2904163 |
agctgaataaattactggctgtaataattattatcatg |
2904126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 2904433 - 2904359
Alignment:
| Q |
16 |
cgacagcctatatccagatttgttaaccaaaataaaagaatctctacacagatactgcacaattctaaaccattg |
90 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2904433 |
cgacaacctatatccagatttgttaaccaaaataaaggaatctctacacagatactgcacaattctaaaccattg |
2904359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 2852400 - 2852327
Alignment:
| Q |
17 |
gacagcctatatccagatttgttaaccaaaataaaagaatctctacacagatactgcacaattctaaaccattg |
90 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2852400 |
gacaacctatatccagatttgttaaccaaaataaaggaatctctacacagatactgcacaattctaaaccattg |
2852327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 2852305 - 2852249
Alignment:
| Q |
83 |
aaccattggcgaaaggcttcttctaagttataac-aagcctgaaaccatgaacttgt |
138 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
2852305 |
aaccatgggtgaaaggcttcttctaagttataacaaaggctgaaaccatggacttgt |
2852249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 2904337 - 2904281
Alignment:
| Q |
83 |
aaccattggcgaaaggcttcttctaagttataac-aagcctgaaaccatgaacttgt |
138 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
2904337 |
aaccatgggtgaaaggcttcttctaagttataacaaaggctgaaaccatggacttgt |
2904281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University