View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_16 (Length: 300)
Name: NF10638_low_16
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_16 |
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| [»] scaffold1031 (3 HSPs) |
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| [»] scaffold1037 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 15170632 - 15170898
Alignment:
| Q |
14 |
agatcacataagcaacagagtcaaataacaacaataagtcataaaatgtagtaattgattcaagaagatggaacaacagaaacactagccactattcttt |
113 |
Q |
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| T |
15170632 |
agatcacataagcaacagagtcaaataaca---ataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattcttt |
15170728 |
T |
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| Q |
114 |
ccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcattttaacacctagaaatctaacaaaaaag |
213 |
Q |
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| T |
15170729 |
ccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcattttaacacctagaaatctaacaaaaaag |
15170828 |
T |
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| Q |
214 |
tgtatattagagactacatgcatgagaacccagcactttttagcatcttgtgtgtgagtgaataacaaac |
283 |
Q |
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| T |
15170829 |
tgtatattagagactacatgcatgagaacccagcactttttagcatcttgtgtgtgagtgaataacaaac |
15170898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 15169930 - 15169991
Alignment:
| Q |
109 |
tctttccatttacaaaagtgaacaattgtgtctgtcccttacaagaaactaca-aacaaaat |
169 |
Q |
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| T |
15169930 |
tctttccatttacaaaagtgaacacctgtgtttgtcccttacaataaacaacataacaaaat |
15169991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: scaffold1031
Description:
Target: scaffold1031; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 28 - 283
Target Start/End: Original strand, 1 - 252
Alignment:
| Q |
28 |
acagagtcaaataacaacaataagtcataaaatgtagtaattgattcaagaagatggaacaacagaaacactagccactattctttccatttacaaaagt |
127 |
Q |
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| T |
1 |
acagagtcaaataaca---ataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaagt |
97 |
T |
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| Q |
128 |
gaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcattttaacacctagaaatctaacaaaaaagtgtatattagagac |
227 |
Q |
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| T |
98 |
gaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcattttaacacctagaaatctaac-aaaaagtgtatattagagac |
196 |
T |
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| Q |
228 |
tacatgcatgagaacccagcactttttagcatcttgtgtgtgagtgaataacaaac |
283 |
Q |
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| T |
197 |
tacatgcatgagaaccctgcactttttagcatcttgtgtgtgagtgaataacaaac |
252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 1743 - 1882
Alignment:
| Q |
43 |
aacaataagtcataaaatgtagtaattgattcaagaagatggaacaacagaaacactagccactattctttccatttacaaaagtgaacaattgtgtctg |
142 |
Q |
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|||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| || |
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| T |
1743 |
aacagtaagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaagtgaacacttgtgtttg |
1842 |
T |
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| Q |
143 |
tcccttacaagaaactacaaacaaaataacaaaattcact |
182 |
Q |
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| T |
1843 |
tcccttacaataaactacaaacaacataacaaaattcact |
1882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 3195 - 3289
Alignment:
| Q |
28 |
acagagtcaaataacaacaataagtcataaaatgtagtaattgattcaagaagatggaacaacagaaacactagccactattctttccatttacaaaa |
125 |
Q |
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| T |
3195 |
acagagtcaaataaca---ataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaa |
3289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1037 (Bit Score: 166; Significance: 7e-89; HSPs: 3)
Name: scaffold1037
Description:
Target: scaffold1037; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 3076 - 3256
Alignment:
| Q |
28 |
acagagtcaaataacaacaataagtcataaaatgtagtaattgattcaagaagatggaacaacagaaacactagccactattctttccatttacaaaagt |
127 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3076 |
acagagtcaaataaca---ataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaagt |
3172 |
T |
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| Q |
128 |
gaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcattttaacacctagaaatctaacaaaaa |
211 |
Q |
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| T |
3173 |
gaacaattgtgtctgtcccttacaagaaactacaaacaaaataacaaaattcactcattttaacacctagaaatctaacaaaaa |
3256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1037; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 149 - 283
Target Start/End: Original strand, 1 - 134
Alignment:
| Q |
149 |
acaagaaactacaaacaaaataacaaaattcactcattttaacacctagaaatctaacaaaaaagtgtatattagagactacatgcatgagaacccagca |
248 |
Q |
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| T |
1 |
acaagaaactacaaacaaaataacaaaattcactcattttaacacctagaaatctaacaaaa-agtgtatattagagactacatgcatgagaaccctgca |
99 |
T |
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| Q |
249 |
ctttttagcatcttgtgtgtgagtgaataacaaac |
283 |
Q |
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| T |
100 |
ctttttagcatcttgtgtgtgagtgaataacaaac |
134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1037; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 1625 - 1764
Alignment:
| Q |
43 |
aacaataagtcataaaatgtagtaattgattcaagaagatggaacaacagaaacactagccactattctttccatttacaaaagtgaacaattgtgtctg |
142 |
Q |
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|||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| || |
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| T |
1625 |
aacagtaagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaagtgaacacttgtgtttg |
1724 |
T |
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| Q |
143 |
tcccttacaagaaactacaaacaaaataacaaaattcact |
182 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||| |
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| T |
1725 |
tcccttacaataaactacaaacaacataacaaaattcact |
1764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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