View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_17 (Length: 279)
Name: NF10638_low_17
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 262
Target Start/End: Original strand, 19857580 - 19857830
Alignment:
| Q |
12 |
aagaagaagatgaaattctggagacatggttgtttctttcttgaagatgagaaataagaaaggttaggttgcggatgaaatgtgaaagacgaagaatgtt |
111 |
Q |
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| T |
19857580 |
aagaagaagatgaaattctggagacatggttgtttctttcttgaagatgagaaataagaaaggttaggttgcggatgaaatgtgaaagacgaagagtgtt |
19857679 |
T |
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| Q |
112 |
ggcggggttagttactagttatatagaaaggcggtgtgagttgtgtggttaagtttttgttaaccatggttaaaggaatatactcactccatcagaaaat |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19857680 |
ggcggggttagttactggttatatagaaaggcggtgtgagttgtgtggttaagtttttgttaaccatggttaaaggaatatactcactccatcagaaaat |
19857779 |
T |
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| Q |
212 |
aaaggaggaaaactttatgagtaattataaagttaatggaaatgtgacaga |
262 |
Q |
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| T |
19857780 |
aaaggaggaaaactttacgagtaattataaagttaatggaaatgtgacaga |
19857830 |
T |
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