View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10638_low_18 (Length: 273)
Name: NF10638_low_18
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10638_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 4537182 - 4537423
Alignment:
| Q |
20 |
aagtaggagaagtgctgacatttgatat-aacaatggcacgaataagatgattgtagttgctgaaatggaaatnnnnnnnnn--gtcaatgttttgttgg |
116 |
Q |
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| T |
4537182 |
aagtaggagaagtgctgacatttgatatcaacaatgccacgaataagatgattgtagttgctgaaatggaaattaaaaaaaaaagtcaatgttttgttgg |
4537281 |
T |
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| Q |
117 |
aatatatgaatattattcaacattcattgtaacaacactattaagcaatatctttaaaaactagatcagtattattggcgatgacaggccaaactataag |
216 |
Q |
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||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
4537282 |
aatatgtgaatattattcaacatt----gtaataacactattaagcaatatctttaaaaactagatcagtattattggcgataacaggccaaaccataag |
4537377 |
T |
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| Q |
217 |
cttgttctaaacaatacttagaggcctgctatttcattttattctt |
262 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4537378 |
cttggtctaaacaatacttaaaggcctgctatttcattttattctt |
4537423 |
T |
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