View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10638_low_19 (Length: 270)

Name: NF10638_low_19
Description: NF10638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10638_low_19
NF10638_low_19
[»] chr8 (2 HSPs)
chr8 (19-260)||(43164865-43165106)
chr8 (63-257)||(41311190-41311384)
[»] chr7 (8 HSPs)
chr7 (128-257)||(30165608-30165737)
chr7 (77-234)||(30125167-30125324)
chr7 (177-234)||(30131121-30131178)
chr7 (202-257)||(28181025-28181080)
chr7 (64-109)||(28180514-28180559)
chr7 (66-148)||(30131210-30131292)
chr7 (185-257)||(30120098-30120170)
chr7 (64-148)||(30120207-30120291)
[»] chr2 (2 HSPs)
chr2 (69-234)||(21426470-21426635)
chr2 (64-148)||(21430161-21430244)
[»] scaffold1051 (1 HSPs)
scaffold1051 (79-147)||(1971-2039)
[»] chr4 (1 HSPs)
chr4 (81-109)||(45366195-45366223)


Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 43165106 - 43164865
Alignment:
Q  19 ctatgattacacggtagttttggggtcctatgaatatcatccattggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43165106 ctatgattacacggtagttttggggtcctatgaatatcatccattggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaa 43165007  T
Q  119 caaattgagtttgattctgatttgccttattggaatactgaaagacctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43165006 caaattgagtttgattctgatttgccttattggaatactgaaagacctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctgg 43164907  T
Q  219 tttataattatgagactgaaatagatgttattattgcctatg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43164906 tttataattatgagactgaaatagatgttattattgcctatg 43164865  T

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Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 63 - 257
Target Start/End: Complemental strand, 41311384 - 41311190
Alignment:
Q  63 tggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaag 162  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||||| |||    
T  41311384 tggtatctagttcaattgacttggagattttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataagaatactgcaag 41311285  T
Q  163 acctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcct 257  Q
      || | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||||||||||||    
T  41311284 ctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcct 41311190  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 30165608 - 30165737
Alignment:
Q  128 tttgattctgatttgccttattggaatactgaaagacctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataatt 227  Q
    ||||||||| ||||||||||| ||||  ||| | |  ||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  30165608 tttgattctcatttgccttataggaaccctgcatgctctgaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataatt 30165707  T
Q  228 atgagactgaaatagatgttattattgcct 257  Q
    || |||||||||| ||||||||||||||||    
T  30165708 atcagactgaaatggatgttattattgcct 30165737  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 77 - 234
Target Start/End: Complemental strand, 30125324 - 30125167
Alignment:
Q  77 attgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaagacctgaaggtgctc 176  Q
    |||||||||||||||||| |||||||||||||| | |||||  ||||||||||||||||| ||||||||||| |||||||||   |  || | ||    |    
T  30125324 attgacttggagattttcccattgagagctaataagtgggaggaaattgagtttgattctcatttgccttataggaatactgctcgctctaacggatggc 30125225  T
Q  177 ccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagac 234  Q
    ||||||| |||| ||||||||||||  ||||||||||||||||| ||||| |||||||    
T  30125224 ccagagttgggttgttcttgaatgggactattcattggctggttcataatcatgagac 30125167  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 30131178 - 30131121
Alignment:
Q  177 ccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagac 234  Q
    |||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  30131178 ccagagtcgggttgttcttgaatggggctattcattggctggtttataattatgagac 30131121  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 257
Target Start/End: Complemental strand, 28181080 - 28181025
Alignment:
Q  202 ttctattcattggctggtttataattatgagactgaaatagatgttattattgcct 257  Q
    |||||||||||||||||||||||||||||||||  |||| | ||||||||||||||    
T  28181080 ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcct 28181025  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 28180559 - 28180514
Alignment:
Q  64 ggtatctagttcgattgacttggagattttctcattgagagctaat 109  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||    
T  28180559 ggtatctagttcaattgaattagagattttctcattgagagctaat 28180514  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 30131292 - 30131210
Alignment:
Q  66 tatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttat 148  Q
    ||||||||||  ||||||||| |||||||||||||||||||| |   ||  |||||||| || ||| |||| |||||||||||    
T  30131292 tatctagttcacttgacttggggattttctcattgagagctattagctgaaaacaaattcaggttgcttctcatttgccttat 30131210  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 30120170 - 30120098
Alignment:
Q  185 gggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcct 257  Q
    |||| ||||||||||||  ||||||||||| ||||| ||||| |||||||  | ||  |||||||||||||||    
T  30120170 gggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcct 30120098  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 30120291 - 30120207
Alignment:
Q  64 ggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttat 148  Q
    ||||||| ||| ||||  |||||||||||||||||||||| ||||| | ||| ||||| ||||| ||| || | |||| ||||||    
T  30120291 ggtatctggtttgattaccttggagattttctcattgagaactaataagtggaaacaagttgaggttggttttcatttaccttat 30120207  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 234
Target Start/End: Original strand, 21426470 - 21426635
Alignment:
Q  69 ctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaagacctga 168  Q
    ||||||| ||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||| |||| |||||||||||   | ||||||      |||    
T  21426470 ctagttcaattgacttgaagattttctcattgagagctcataaatggaaacaaattgaggttgcttctcatttgccttatatcattactgatgtctatga 21426569  T
Q  169 aggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagac 234  Q
    |  |   |||||||||||||||||||| |||||  ||||||||||||||||| |||||| ||||||    
T  21426570 atttcggcccagagtcgggtcgttcttaaatggggctattcattggctggttcataattctgagac 21426635  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 21430161 - 21430244
Alignment:
Q  64 ggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttat 148  Q
    |||||||||||| |||||||| |||||||||||||||||||||||| ||| |||| |||||||| ||| |||| |||||||||||    
T  21430161 ggtatctagttcaattgacttagagattttctcattgagagctaatcaat-ggaaaaaattgaggttgcttctcatttgccttat 21430244  T

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Target: scaffold1051 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 2039 - 1971
Alignment:
Q  79 tgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgcctta 147  Q
    ||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||  |||||||||    
T  2039 tgacttggagattttctcattgagagctaataagtggaaacaaattgagtttggttctcctttgcctta 1971  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 45366223 - 45366195
Alignment:
Q  81 acttggagattttctcattgagagctaat 109  Q
    |||||||||||||||||||||||||||||    
T  45366223 acttggagattttctcattgagagctaat 45366195  T

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